Detail information of GWHGAAEX004484/evm.TU.scaffold_15.96
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|694395564|ref|XP_009373102.1| | 1.92E-82 | PREDICTED: probable WRKY transcription factor 33 [Pyrus x bretschneideri] |
| Swissprot | tr|Q8S8P5|WRK33_ARATH | 1.00E-78 | Probable WRKY transcription factor 33 |
| trEMBL | tr|D9ZJG3|D9ZJG3_MALDO | 7.00E-82 | WRKY domain class transcription factor {ECO:0000313|EMBL:ADL36866.1} |
| TAIR | AT2G38470 | 5.00E-78 | WRKY DNA-binding protein 33 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 1703350 | 1705162 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004484
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03106.14 | WRKY | 13 | 68 | 5.40E-20 |
| PF03106.14 | WRKY | 148 | 204 | 2.40E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | WRKY |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13424 | WRKY33 | MAPK signaling pathway - plant | map04016 |
| Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.540 |
| SRR2545915 | Juvenile tuber | 2.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.690 |
| SRR5643514 | five period of Gastrodia elata | 0.690 | |
| SRR5643515 | five period of Gastrodia elata | 0.110 | |
| SRR5643524 | five period of Gastrodia elata | 0.660 | |
| SRR5643525 | five period of Gastrodia elata | 0.120 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.350 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.100 | |
| SRR5643661 | five period of Gastrodia elata | 0.310 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.03 |
| Juven | Juvenile tuber | 0.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.53 | |
| Mother_Juven | Mother tuber of Juvenile | 1.19 |