Gene detail

Detail information of GWHGAAEX004486/evm.TU.scaffold_15.98

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672136962\|ref\|XP_008792188.1\|	2.76E-102	PREDICTED: protein SCAR2-like [Phoenix dactylifera]
Swissprot	tr\|Q5XPJ9\|SCAR2_ARATH	2.00E-88	Protein SCAR2
trEMBL	tr\|A0A061ERN7\|A0A061ERN7_THECC	2.00E-99	SCAR, putative isoform 3 {ECO:0000313\|EMBL:EOY07042.1}
trEMBL	tr\|A0A061ERN7\|A0A061ERN7_THECC	1.00E-21	SCAR, putative isoform 3 {ECO:0000313\|EMBL:EOY07042.1}
TAIR	AT2G38440	9.00E-88	SCAR homolog 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	1709779	1725575	-

Transcript Sequence
>GWHTAAEX004486 TAAAAATTCTGGAAGAGCGGAAGAGAAAGAGAGAGCTACAGAGCTACAGAACTCCGTAACAATGGTGGAGGCGTGACTCGCGGGCTTCATTCGTCCTCGTGAAGCGTTGGTGGTGCGTTTTCTTCTCAAAGATGCCGATGGTGAGGTACCGGATAAGGAACGAGTGCGGACTCGCGGATCCGGCGGTGTACCTTACGGCCGAAAAGGATGACCCCGAAGCGCTCCTCGAGGGAGTGGCCATGGCTGGCCTTGTTGGAGTTCTGAGGCAGCTTGGTGATCTCGCAGAGTTTGCAGCGGAGATATTTCATGATTTGCATGAAGAAGTGATGGCAACTGCTTCCCGAGGGCATGGGCTGTTATTCCGTGTTTTACAACTTGAGGCAGAGTTTCCTTTGATAGAAAAATCCATTCTCTCTGAAACGGATCATTCACATTGTGCTCACAATGCAGGTATTGATTGGCATGCAAATATTAGAGTTGAACATAATTCAGTCATTCAAGGGGATATGCCTCGTTTCATATTAGACTCCTATGAAGAATGCCGTAGTCCTCCTCGGTTATTCATGCTGGACAAGTTTGATGTTGCTGGTGCTGGAGCCTGCTTGACGAGGTACTCTAATCCTTCTTTTTTTAAAACTACGTCAACCTCCTTTGAAACAATGGAATCAGAGGTACAGAGAGAGAAGAGAGCTCGAAAGCACAAGAAGAATGAATCATATTGGAGAAGTGCTGAAACAACTGAATCTCGTTTTACACCTATGTTAGACAATTTGCAGTTTACAACTACTGAAAAAGTACCTGAAAAAATTCCAGCAAGGCATGCGAAGCTGAAACACAGGAAAATGATGATTTCAGATATTAGGTGCAGGAAAAGCTATATGGAGAGTTTATTTAAAGAGGAATCATTTGAGCTAAATAATCCGAGAAGCTCTTCAAGTGATTGCCACAATAATAAAATTACAGACTGGGCTCCAGACGTGAAAGATATTCTAATTGATGGTGTGACTGATTCCTCGCTCGCTGGAATGGAATTTTCTCTTGAGCCTCCTAAAGATGAAATGACAGGAAAAGTGCAGAATGAGAAAAGCGAAGATGGTGAAAATTTGGAAATTGTTTCCAGATCATCTTGTGTCACAAAAAAAATTTATCCGTATTCACAAATTGATGAAGAAGCAATGTTGGTGGAACATGGAAATGAAATGGAAAACCATGCTTTGGACTTTTCTCTCTCTGAAAATGATATGATTCCTCCACCTCTCAAGCTAATGCAGAGCAACCTTTTGGCTGTTTCTGGATTCCTTACAGATGATGATCATGGTAGTTCCACGTCTGATGATATTGGGAGTGAACTAGAAAATTATGTTGATGCATTGAATACCATGGAATTTGAAATAGGAGCAGATTATGAGAGCAGAGCTAAAGCAGATTTAAGTCTCTTCAACCCTGAATTTCAGGGAGAAAATCTCAGCATCAGTAGGCACCCTCAATCTTCTGAATCATGCATCGTTAGAAGCTTTAATATATTGGCGACTACAGAAAAAATGAAAGATGAAATGCCTATTCTGTCACAGTCAGTTATTGAAAAATCTTTTTGTTTGGAAATTAACCATAGGGAAAACGGAAATCTAGAGAGAATGTGTAAAGATATGGAATTGGTTCCATCTGTTAGCTTGGCTTCTAATGAAGTCCGCCATCATCAATCCAGTGCTACCATTGTTTTTCCTGTAAATAACAAAGAATTCAGTAATTATTGTAAAACCGATTCAGCTTTGATGTCCAAACATAATGTTGAGGAAACACAATCACTTAATAAACATTCAGATGTTGCGACCTCTGGTGGCACCAAAATAAATTCAAAAGTTGGTGAACATGCTGAGTCTTCTTTTCTTCCTTGGCTGACAAATCATGTTGCGGGTAATCCCACATTTAAAGAATGTTCTGATATTTTTACTGGCATTCTTGAAGAAATTCATTCCAAAGACCATACTGAAGAGAGACCTTCAGAAAGTAAAACAGTTAAGGATAATATGCCAAGTAATCTTTCAGAAATTGGACATTGTATATTACCTGAGAATGGTTCTGCAGAATATTCCAAAATTTCAATTTTGACTTCACTTAATGATGAGTTTGGACAGCCATTAGTGGCACTGGAACGAGACATAAATGATTGTATATCCGGGTGTTCATCTCCGTCTGTTCTCGTGGGCTCTACTGTTCTGGAATCTCAAAATACGTCTAGTGAGTTGGAGAGTGATATGCAATCAGAAGATTTACCTACAGAAAATTTTCTAAATAACATGAAGGGTAATGATGAAGAAGCGAAGCAGTTAAACTCTAGTGTGCTTTTTGTCGCTGAGCAACATATGCTACCATTAGCATTAAGTAATGACGATGGTTCTCATGGTTCCACTCAAACCTCTGAAAATGGCAATGATTTAGCATACATATCTGATGAGAGAGGCTCACCTTGTGGATGCCAAAATAAAGCAGCGATGGACCAATTATCAGGGCATGATGAAAAAGGTACTTTTAATGATATGGCAAGCACATTTGAGATGCTTAAACATCCACAAACACAAACAGGAAGCCGCCATGTGGAGGTTTCTTCAGGTTGCCCAAAAGATTCATTGCCTGATTCAGTGGAGGACGATGTAGGCTACTCTGTTGAGAATTTTTCACCCAAAAGTTTGGCCTTTTCTCCTAATATTGTTTCATCCATCCTGCTTCCTTTAAGTTTGACTTCTGAATTTGAGAGTGCTAATGTAACTCTGGAGGAATCTGTGCATCAACAAACACCATTAGGCTTTGGAAATGTTGATATTTCAGGAAATGAATCTTTAATTTCTTCAGCCATTGCAGATGAATTGGAACATTCTTCTGTTGCAAGTGTAACGCTGGCGTCTTGTAATAGGAATATGCTAAAACCTCTGTTATCTGCCTACCAAGAAGATCTTATTAGAAATCATTTGCAGACTGAAGTATCAGAGTTGACCATGAGAAATGGAAATGAACATGTCCGTGATGGGCTGGAACCTGCAGATGGATCCACTGCGCTTAGTGTTAGCATTTTGACTGAGAATGGTATACCCAAAGACATTATAGATGACCAGGTTCTGAACAAGCAAAACTCTGCAAAAGTAATTGCTTTTGATATACTAACACTTGATGATCGACTTTCAGAGGATAATACATTGCATCAACATAAGTTGCATATTAAAGAGCCAGTTGTTACAAGAGATTCAACATTGTTGCAGTTTGAAAACAAGCCATTTATGTTGTTTACTCTGAATGAAATGCTAGAAATGGCGAATTCAGTTTCAAGAAATCAGTCATCTACTCCAGAATTACCAAGGTTATCTGAATCTGAATTGGTTGGTGCTAAAATGGAAGATAAAACATCTGCAGGAAAAATGGAGCAAGATTTTTATTTTAAGTCTGTGAATACTGAAGAAAATACTGATACCGAGGTTCTTTCCTTGTTACAGCCTTCAAATGTATGCAACTTTGTTGTACAGTTTCATGATGTTCCTGTTTCTAAGGATGTCTTGAATTTAAATAGGCCTTTCATAGAGTTGGATAATGCAAAAGCTCATTCAAATTCTTACAGTATGACTCTGGATGGAACTAATTACCAGATTCCAAACCTGTTAGAATTTTCAAATTTATGCAGCGATGATGCACAAATTCAAAGAGTATCAGTTTCTGAAGATGCATCCTTGAATCAGCATAAGCCAAAGCTTGAAGAAATTGCCATTACAAATGGCTTGACTTCCTTGATGCTTGGAAGCAAACTGCATTTGCCTCATTGCAAAAATGAAGACCATACTTCTATCGAGAGTTTGATAGGCTCCAGAGAAGATGCGCAAGATTCAAATTTGTGTGCTTCCATGCAGCAATGTCATACTAATTCAGAAAGGCTAGAAGTCCTATCTGAGAATGCTTCTGTGTTTGAAGCAGTTATAGAAAATGATAAGTTTATCGAGCGTTTGACATGCTCCAGAGAAGATAAGGAAGATTCAGATCCAGATGTTCGCATTCAGCATTGTCAGACTGATGCAGAACGGATAGAACTTTTATTTGAGAATGTTTCTGAAGCAGTTGATGAAACAAGTGTATCACCTTTATATAGAGCGGTGGAGAATTTTGAACCGACTCACATACATATTGACAAAGTTTTCTCCTTAGATCCCACTATTATTCAGTATAATTTAAAACAGGAGCATGAAACTTTGCTTAGCCATGGATGCAGCGATGAGTTGAACATGTCTTTGTCAAAGACATATAAGAACGAACAATTAGATGCAAATATCACTGTTTCATTTCAAATTGATTCTGCTCATCCTGGATGTTCTTTGACATCTGAAATGGCTTCAGGATCAGTAATTGTTGGCTGTCCCATTTCTACAGTTCACACACATGAGTATACTCAAGCATTGTCAGGCGAAATGATCTCCATCTTCCCAGCTATAGAAGAGGGAATTGAAGAAATACCTCAACCACCACTACCCCCTATTCAATGGATAATGGGTAAAACTGAACTAGGATCTTTAATGGAAGGTGCACGGCAGACCATAATGGAGTCTAATATGCATATGAATCTCTTACCAGCTGCCAATGAGAAAATGATTCCTCAATCAGCGCCGCCGCCTTCTGCTATCCAAAAAAGTTTTCTGACTGATTCCCCATTTGTAGATTGTAAATTAACAGAGTCCTTCAATTTGTCTGAGTTTCCTGCAATCACCATTAATCAGAAGCAACAGAATGAACTATATTCTTCAGCTCTTTCCTTCTTTTCATCTCAAGCAGATGAAAAGCATTCTTACGTGAACTTTACAACTGATCCAAATAACCCATGTACTATAGCACCATCACTTGAGGATGTTCCCCAAAACCCGAACTTCTTGGAAACAGTGCCCCTTCAGCCTATTGAAAAAAGCAGATCGAGTCTAGTTAACTTCTTACCAGGTTTAGAGTTGGAAAGATCTCTAGAAGCCTCGATTAGAGATAGAGATGGGATTCAGCCTTTGAGCTCATTCATGCTCATGCCAATCAATGGGAACGGCATGTATCAGCATGGCTATGGAGATTATGAATATTATGAAGGTGAAAATATGCAGTATCACAACTTGTTAACGCCATTTCCAGTGTCTGCTCACAGCATTTCTCATTATGGTTATCAAATAATTCAAAGGAATGGTAATTCATCTTTTTCGCATGATATGATGTTGCCGGATATTGAAGTTGGTAGGCTAAATGGAAAACAGCGTTCCATTCTGAACAGACCAAGAGACCCTCTGATAGAGGCTGTTGCTGCTCATGATAAAAGCACGATGAGGAAGGTATCAGAACTTGATCAGCCCCCAACGAAACCAAAGGACGATGAAAAGAACTTGTTGCTTGAACAGATAAAAAATAAGTCCCTCAATCTGAAGCCGACAACTTCTAAGGTGAACATGATTAAAGCTCCTTCAACAAACCTCAAGGTTGCTGCAATTCTGGAAAAAGCAAATGCGATCCGGATGGCATGTGTGGGAAGTGATGAAGAAGAAGAAGGAGACGATGACTGGAATGACTCATGAGGTTCATCATTGCTTAAATATCTCCATGGTCATGGTGACCATCTGCTATCATACTGCCCCATCTATCAACTAAAGCTTGTTCAGCTTATTAGATGAGCCCTTGGAGCTGTACTACCATCTGAAGAAAGGAAAACGCATGTATCTGGCTCCAAAAATTAACCAAATTAAGTCTCTAAAAACTATTAGATGGATGCTGTGCCAAATACTTTAAACATGGCATTCTTCTAATAGTCTTGGAGACATTTTTGATTTATTTTTTGTGCAGTGCTTTTGAAGAAATACTCTCACACCTAACAATCTAGCAGGCTATATTGTAAAGTTTTTTCAAGCTGTACCTAGTCATGTATAATCTTGTCTTTAAGCCATCTTTTGCTAAGTGTAATATCTTTTAATCGGCCTGTGCATTGCAAGGGCCCACATATAAAAGTACTTTTCTTAGTTACCTTGTAAGTGTAGTTGATTTGCGAATTTTGTTATATAGATTCCTCAAGAGCTAGAAATCAATTCCAAAGGAAAAGGCCTCTTGTTATTTTTCTTGATAAATCTGAGCTTGCCAAGCCACATTCAGGTTTTCATTCAGTTTCTTAGAAGATGGCCTCAAGAGCACCACACACCAGATTTGCTTGCCGCATATGTGAAACCCTCCAGATTCTTTCAAATTTCGGTAGCCAGGCTGTGCAAATTAAATTTTGTGAAGGGAAATTTCATGATGTTAAAAGTTTTGGGTTATACTAATTGTTTTTCTTAATAATATACTGGAATTTTTGTTGTTCGGGTTATGGAGACGTCTAGTTGTTGTACAATGCTAAAAAACTAGGTCAGGCTTGGTTGTTTTATTGGTACTTGGGAACTCCCTTTAGAATTTGGTTTCTCAAGTTAGGACTTTTAATGGAAAACTGGAAAAAGCTTCAATGCTAATTCTTAGATAGCC

Network for GWHGAAEX004486

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX004486
MPMVRYRIRNECGLADPAVYLTAEKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEIFHDLHEEVMATASRGHGLLFRVLQLEAEFPLIEKSILSETDHSHCAHNAGIDWHANIRVEHNSVIQGDMPRFILDSYEECRSPPRLFMLDKFDVAGAGACLTRYSNPSFFKTTSTSFETMESEVQREKRARKHKKNESYWRSAETTESRFTPMLDNLQFTTTEKVPEKIPARHAKLKHRKMMISDIRCRKSYMESLFKEESFELNNPRSSSSDCHNNKITDWAPDVKDILIDGVTDSSLAGMEFSLEPPKDEMTGKVQNEKSEDGENLEIVSRSSCVTKKIYPYSQIDEEAMLVEHGNEMENHALDFSLSENDMIPPPLKLMQSNLLAVSGFLTDDDHGSSTSDDIGSELENYVDALNTMEFEIGADYESRAKADLSLFNPEFQGENLSISRHPQSSESCIVRSFNILATTEKMKDEMPILSQSVIEKSFCLEINHRENGNLERMCKDMELVPSVSLASNEVRHHQSSATIVFPVNNKEFSNYCKTDSALMSKHNVEETQSLNKHSDVATSGGTKINSKVGEHAESSFLPWLTNHVAGNPTFKECSDIFTGILEEIHSKDHTEERPSESKTVKDNMPSNLSEIGHCILPENGSAEYSKISILTSLNDEFGQPLVALERDINDCISGCSSPSVLVGSTVLESQNTSSELESDMQSEDLPTENFLNNMKGNDEEAKQLNSSVLFVAEQHMLPLALSNDDGSHGSTQTSENGNDLAYISDERGSPCGCQNKAAMDQLSGHDEKGTFNDMASTFEMLKHPQTQTGSRHVEVSSGCPKDSLPDSVEDDVGYSVENFSPKSLAFSPNIVSSILLPLSLTSEFESANVTLEESVHQQTPLGFGNVDISGNESLISSAIADELEHSSVASVTLASCNRNMLKPLLSAYQEDLIRNHLQTEVSELTMRNGNEHVRDGLEPADGSTALSVSILTENGIPKDIIDDQVLNKQNSAKVIAFDILTLDDRLSEDNTLHQHKLHIKEPVVTRDSTLLQFENKPFMLFTLNEMLEMANSVSRNQSSTPELPRLSESELVGAKMEDKTSAGKMEQDFYFKSVNTEENTDTEVLSLLQPSNVCNFVVQFHDVPVSKDVLNLNRPFIELDNAKAHSNSYSMTLDGTNYQIPNLLEFSNLCSDDAQIQRVSVSEDASLNQHKPKLEEIAITNGLTSLMLGSKLHLPHCKNEDHTSIESLIGSREDAQDSNLCASMQQCHTNSERLEVLSENASVFEAVIENDKFIERLTCSREDKEDSDPDVRIQHCQTDAERIELLFENVSEAVDETSVSPLYRAVENFEPTHIHIDKVFSLDPTIIQYNLKQEHETLLSHGCSDELNMSLSKTYKNEQLDANITVSFQIDSAHPGCSLTSEMASGSVIVGCPISTVHTHEYTQALSGEMISIFPAIEEGIEEIPQPPLPPIQWIMGKTELGSLMEGARQTIMESNMHMNLLPAANEKMIPQSAPPPSAIQKSFLTDSPFVDCKLTESFNLSEFPAITINQKQQNELYSSALSFFSSQADEKHSYVNFTTDPNNPCTIAPSLEDVPQNPNFLETVPLQPIEKSRSSLVNFLPGLELERSLEASIRDRDGIQPLSSFMLMPINGNGMYQHGYGDYEYYEGENMQYHNLLTPFPVSAHSISHYGYQIIQRNGNSSFSHDMMLPDIEVGRLNGKQRSILNRPRDPLIEAVAAHDKSTMRKVSELDQPPTKPKDDEKNLLLEQIKNKSLNLKPTTSKVNMIKAPSTNLKVAAILEKANAIRMACVGSDEEEEGDDDWNDS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.660
SRP064423	SRR2545915	Juvenile tuber	17.210
SRP108465	SRR5643513	five period of Gastrodia elata	9.640
	SRR5643514	five period of Gastrodia elata	8.920
	SRR5643515	five period of Gastrodia elata	9.870
	SRR5643524	five period of Gastrodia elata	9.090
	SRR5643525	five period of Gastrodia elata	7.600
	SRR5643528	five period of Gastrodia elata	9.210
	SRR5643658	five period of Gastrodia elata	6.370
	SRR5643659	five period of Gastrodia elata	9.840
	SRR5643660	five period of Gastrodia elata	9.540
	SRR5643661	five period of Gastrodia elata	9.300
	SRR5643662	five period of Gastrodia elata	8.400
	SRR5643663	five period of Gastrodia elata	8.350
	SRR5643664	five period of Gastrodia elata	8.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.470
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.950
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.130
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.590
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.580
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.580
SRP279888	Gastro	Gastrodia elata tuber	10.96
	Juven	Juvenile tuber	22.50
	Mother_Gastro	Mother tuber of Gastrodia elata	11.17
	Mother_Juven	Mother tuber of Juvenile	25.48