Gene detail

Detail information of GWHGAAEX004488/evm.TU.scaffold_15.100

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1305	1.00E-137	Amino acid transporter protein
nr	gi\|297597891\|ref\|NP_001044672.2\|	3.47E-180	Os01g0825800 [Oryza sativa Japonica Group]
trEMBL	tr\|Q5QMB0\|Q5QMB0_ORYSJ	1.00E-180	cDNA clone:J033087L14, full insert sequence {ECO:0000313\|EMBL:BAG95448.1}
TAIR	AT3G56200	1.00E-137	Transmembrane amino acid transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	1733582	1743957	+

Transcript Sequence
>GWHTAAEX004488 CTTATTAGATGCACCAATATAATTTTAATATTATAAATAATAATATTATTTAGGAGGAAGCTAATTTTTTCACAAAATTTTTCTCACTACCAAACTCCTTAGGAAAATTCTCTGAGTGTTCAGCTCCCCCAAAAATGCATAAAATGCATCTCCTATAGGGGAAGAAATCTCCCGCGAGAGCTAGAGGAGATCTCTCTCGGTATCCCCAAAAGGCCAAAATGCATCCCAAGTCTTCGGCGGCAAAAGCAGGCTCCGGTGAGGCGGTCATCCCGCTCCTTCCCGATTCATCATCTTCATCTTCTTCTTCATCTTCTTCCTGCTCCTCCGGCGGAGGCGCATCCTTCTTCGGCGCGGTATTCAACATCTCGACGAGCATCGTCGGCGCCGGAATCATGTCTATTCCGGCTACCCTCCGCGTCCTCGGAGTCCTTCCCGCCTTTCTCCTCCTCTCCCTCACGGCCTTCGTCTGCGACGTCTCCGTCGAGTTCCTAACGCGGTACACCTCCGTGGCTGGCGATTCTCCGGCGGAGGCCTCCTATTCCGGCGTCATGGCCCGATCTTTCGGCCGATTGGGCTCCGCGGTGCTCCAGATCTGCGTCGCCCTCAATAATGCCGGCGGCCTCATGATGTACCTCATCATTATCGGAGACGTGATGTCCGGGAACCGATCCGAGGGGGCGGTCCATTCGGGGGTGCTCCAGGAGTGGTTCGGGGACCGCTGGTGGACCGCCAGATCCCCCGCCATTGCTGCTGTCGTCGCCGCCGTCTTGCTCCCTCTCGCGCTTCTCCGCCGAGTAGATTCGCTGAGGTTTACATCAGCAGTTTCAATACTCCTTGCGGTCGTATTTGTTTTCATCAGCTCGGGAATGGCCGCCTATGCTCTCTTCTCCGGCGTGGCCAAAACACCAAGACTGTTTCCGGACTTTTCCCGCCAATCCGTCCTCGAGCTCTTCACCGCCGTCCCCGTCATCGTCGTGGCCTTCACATTCCATTTCAACGTACACCCGATACGGGCGGAGATGAGCCGTCCCTCGGACATGATTCCGGCGGTGCGCGTCGCCCTCCTGCTCTGCTCCGTCATCTACTCCACCGTCGGGTTTTCCGGCTACCTTCTGTTCGGCGACCAGACGATGTCTGACGTGCTCGCGAACTTCGGCCGGAGCTCGACGAGCCCGCTTCTCAACGACGCAGTGAGGCTGAGCTACGCCCTCCACCTGGTGCTGGTGTTCCCTTTGATCTTCTACTCCCTTAGGCTCAACATCGACGGGCTCGTCTTTCCGAAGGCCCGGCGGCCGCTCGTCGCCGACGACAGCCGGTTCTTGTGCCTGACCGCCCTGCTGCTGGCCTTCGTTTACTTGGCCGTGATGGCAATTCCCAACATATGGGTGCTGTTCCAGTTTGCCGGCTCAACCACCGCCGTCTGCCTTTCCTTGATCTTCCCCGGAGCCATAGTCTTGAGGGATGTGCATGGAATATCGAGCAGGAAGGACAAACTGATCGCTGCAGGGATGATTCTCTTGGCTATAATCACAAGCTGTGTTGCTATATACTCTGATTTCATAAGCTTCTTTGAAGGCAAGCTGAAGACCAGAAGCTTTACTCTAAAATTTTAA

Network for GWHGAAEX004488

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.17	Aa_trans	39	429	7.70E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	41.470
SRP064423	SRR2545915	Juvenile tuber	18.070
SRP108465	SRR5643513	five period of Gastrodia elata	56.190
	SRR5643514	five period of Gastrodia elata	28.690
	SRR5643515	five period of Gastrodia elata	46.940
	SRR5643524	five period of Gastrodia elata	34.000
	SRR5643525	five period of Gastrodia elata	34.260
	SRR5643528	five period of Gastrodia elata	39.930
	SRR5643658	five period of Gastrodia elata	37.640
	SRR5643659	five period of Gastrodia elata	24.430
	SRR5643660	five period of Gastrodia elata	25.020
	SRR5643661	five period of Gastrodia elata	24.980
	SRR5643662	five period of Gastrodia elata	35.650
	SRR5643663	five period of Gastrodia elata	30.720
	SRR5643664	five period of Gastrodia elata	32.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	78.720
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	59.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	61.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	114.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	132.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	175.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	97.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	133.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	60.510
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.770
SRP279888	Gastro	Gastrodia elata tuber	23.58
	Juven	Juvenile tuber	10.53
	Mother_Gastro	Mother tuber of Gastrodia elata	66.78
	Mother_Juven	Mother tuber of Juvenile	34.48