Gene detail

Detail information of GWHGAAEX004489/evm.TU.scaffold_15.101

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1087	3.00E-89	Cytosolic sorting protein GGA2/TOM1
nr	gi\|672118775\|ref\|XP_008782607.1\|	5.44E-139	PREDICTED: ADP-ribosylation factor-binding protein GGA1-like isoform X1 [Phoenix dactylifera]
trEMBL	tr\|M0SDA8\|M0SDA8_MUSAM	4.00E-131	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P09910_001}
TAIR	AT2G38410	3.00E-89	ENTH/VHS/GAT family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	1750834	1768367	+

Transcript Sequence
>GWHTAAEX004489 AGTCTGCATCAAGAGGAGAGCTGAGCATGGTGGAGAAGCAGGGCACGTGCATTGCACTCTCCTTCTTCATCTTAAGAAATAGGCCAAGCATTTCCCTTTAGATCTATCTATCTGCTTTAAGAGTCGTGCAATGCACAGTCTGCACAAATCTTAAAGCAGATGATCTACGCCTGCAATCTGTCTTTAGATCTGCTTCCAGGAGTTGGAGTGTTCTTCTTCATGTGCCCATCTTCTCCATTTTGCTCACCTCACCTAAGATTTTAATCTTTTTTCTACTACTATATATACACACTGAGTTTTCCTCATGAAATGGGCTGCGGGTTTTCTCTGAATTACATGGAAATTTTTGGTGTTAAATATGATGCCGGATATGATGTCGACTCCGACGTCTTCATTATCGGCGACGGTGAGAGTTGAGAAGGCGACGAGCCATCTCTTGATGATTACGGACTGGACGATGAACATGGATATCTGCGATGCCATCAACACCGAACCATTGCATGCAAAGGATTTTGTGAAAGCCGTGAAGAGGCGTTTGCAGCATAAGAACCCTAGAGTTCAATTTCTTGCTTTAATGCTTATCGAAACGATGATCAAGAACTGCGGCGATTTTGTGCATTTTCAAGTTGTAGAGCGTGAAATTTTGCCTGAGATGGTTAAAATTGTAAGGAAAACTACTGATTTTCAAGTGAGGGATAAAATTTTGGTGCTGCTGGACTCATGGCAAGAAGCATTTGGTGGAGCTGGAGGAAAGTATCCACAGTACTACCATGCTTATGCAGAGCTCAAGACATCTGGGATTCGATTTCCCCAACACGAAAAGGATGCAGCTCTAATATACACGCCTGCTTTACAAACTCACTACCCCCAAATAGGATATGGAATGCCCAGCAATTCTGCTGAAAGGTCTGATGAGACAATCGAAAATGGAAATCTTAGCTTATTGGACATAAGAAACTTCCGAAGTGTTTTGGAGTTGTTCACGGATATGCTGTTAGCAGTGAACCCAGAAGATCGCAAGGCTGTTGAAGATGAAGTTATTGCGGACCTTACTAGCCAGTGTCGCTTACACCAAAAGAACCTTGTGCAGCTGATTAATTCAACGGAGAATGAGGAGCTACTGGGGGAAGCTCTGGCATTGTTTGAGAACTTACAGTCTGCGCTTGCTAGGCATGATGCAATAGCCTCGGGATCTCCTTTGCCCCAAGAAATTAGCCATGCTTCTTCTCTAGTGCCAAGCTCTCTCCCTCCATCCGCTCCCCAGAGTCAGCACAATGACAAAGAAGTAGAAGATGACTCAGCTTCGTTGGTTCACAGGGATTCTAAGCTTAAATCAATCGATGATCAACCAGCCTCGCCCCCGGCTTCTACTTCGACTGTTTCGGAAGCTTCATCATCGAATGCAAGCAACGCCCTTGTCCTTGTGGATCCGCCAACTGCTGAAACAAGTCCCAAAAAGGAAGATGACATGATCGACCTCCTCAGCCTCGTTCTGTCATCAGATGCACCTACTCTCTCTCCTCTTACGCAATCAAGCCCAAATCAAAATCCGTTTTCTTCTCCAAGTTATGTGGCGCCTTGGGCTCAATCCTCCATCCCTCAATCTTCGGTACCGTTACCTCCGGCCTTTCCTCAGCAGCAGCCAGTGATGCAATACCCGTATACATATCAGCCTCCGTCTTTGTGGGCTCCCGGAGTCAGTACGAATCCCTTTCTATCGACAACCTCCATTGATTTTCCTTCACTTTCACCTTCCATATCTCCAGCAACCACTGTGCATCATCCGGCCATGGCTCCTGCTCCTGCTCCGGTTGCAACCACAGTCTCTTTACCAGTTCAGGATTATATGGCTGTACAGAATCTTGGAAACTCGATAGGGTCAAGACAAATGCAGCTGAATGATAACAATTTAGAGCAAGTGGTTGCTGCTTCTTCTCCTGCCCCTGCCCCTGCTCCGGCTCTGGCTCCGGTTCTGGCTTCGGCTCCTGCACCATCTCCGGCTCCTGTTCCTGCGCTGGCTTCAGCTTCTGTTGCTGCCGCAATCTCTTTATCAGATCAGGATTCCGTCGCTGTACAGAAGCTCGGAAACTCGGTAGGGTCTAGAGAAATGCAGCTGAACGATAACAATTTAAATCATGTGGCTCCTGCTCTGGCTCCAGCTCCAGCCCCGGTTCCTGCGTTGGCTTCAGCTTCTGTTGCTACCGCTATCTCCTCACCAGTTCAGGATTCCATGGCTGTACAGAAGCTTGGAAACTCGATTGGGTCGAGAGAAATGCAGCCGAATGATAACGATTTAAAGCAAGTGGCTACTGCTCCTGCCCCGGTTCCGGTTCCTGCGTTGGCTTCAGCTTCTGCTGCTACCGCAATCTCCTTACCAGTTCATGGTTCTATGGCTGTACAGAAGCTCGGAAACTTGATGGGATCAAGAGAAATGCAGCTGAGTGGTAACAACTTAAAGCAAGCGGCTTCGACGATGAACCCAAAGGCCTATGTCCCACCGGATAAGTTGTTTGAGGGTCTTTTGGAGTTGAGGAACCCTGATGGAAGTCTCAAGTCGAGAAACGCCTCCGCCCTGTTGCGATCTTCGGAGTTCGGTCGGCCGGCCGGCTACCACAGCATCGCAGAGGCTTCTTCCGTCGGCCGCGACAACATCGCAGAGGCTTTCTCGTCTGCCTGTTGCCAGGTCTCATTCATTTGTAGTGACGCAAAGGGCAGAGGCTGCTTGGTTTCCATCCTCCTTCCGGAACCCTAA

Network for GWHGAAEX004489

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00790.18	VHS	16	145	2.20E-28
PF03127.13	GAT	205	277	2.70E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	Biological Process	intracellular protein transport

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.930
SRP064423	SRR2545915	Juvenile tuber	22.800
SRP108465	SRR5643513	five period of Gastrodia elata	30.580
	SRR5643514	five period of Gastrodia elata	33.570
	SRR5643515	five period of Gastrodia elata	38.180
	SRR5643524	five period of Gastrodia elata	32.230
	SRR5643525	five period of Gastrodia elata	36.730
	SRR5643528	five period of Gastrodia elata	37.940
	SRR5643658	five period of Gastrodia elata	35.190
	SRR5643659	five period of Gastrodia elata	28.680
	SRR5643660	five period of Gastrodia elata	33.800
	SRR5643661	five period of Gastrodia elata	33.100
	SRR5643662	five period of Gastrodia elata	34.200
	SRR5643663	five period of Gastrodia elata	34.020
	SRR5643664	five period of Gastrodia elata	32.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.130
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.210
SRP279888	Gastro	Gastrodia elata tuber	21.62
	Juven	Juvenile tuber	21.55
	Mother_Gastro	Mother tuber of Gastrodia elata	55.29
	Mother_Juven	Mother tuber of Juvenile	50.01