Detail information of GWHGAAEX004490/evm.TU.scaffold_15.102


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428208282|ref|YP_007092635.1|5.00E-18WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203]
KOGKOG10090Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats)
nrgi|672158483|ref|XP_008798986.1|0PREDICTED: chromatin assembly factor 1 subunit FAS2 homolog isoform X1 [Phoenix dactylifera]
Swissprottr|Q9SXY1|FAS2_ARATH0Chromatin assembly factor 1 subunit FAS2
trEMBLtr|A0A061DRA8|A0A061DRA8_THECC0Transducin/WD40 repeat-like superfamily protein isoform 1 {ECO:0000313|EMBL:EOX92493.1}
TAIRAT5G646300Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001917684851769810+
Transcript Sequence

Network for GWHGAAEX004490

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD4011400.015
PF00400.31WD4061940.0014
PF00400.31WD401051429.50E-07
PF00400.31WD401511830.056
PF00400.31WD403473740.13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.850
SRR2545915Juvenile tuber9.040
SRP108465SRR5643513five period of Gastrodia elata10.980
SRR5643514five period of Gastrodia elata10.630
SRR5643515five period of Gastrodia elata9.580
SRR5643524five period of Gastrodia elata10.350
SRR5643525five period of Gastrodia elata7.160
SRR5643528five period of Gastrodia elata6.210
SRR5643658five period of Gastrodia elata5.450
SRR5643659five period of Gastrodia elata11.820
SRR5643660five period of Gastrodia elata14.350
SRR5643661five period of Gastrodia elata12.590
SRR5643662five period of Gastrodia elata13.220
SRR5643663five period of Gastrodia elata12.060
SRR5643664five period of Gastrodia elata10.810
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.000
SRR6049655Rhizomagastrodiae_C368-T10_good_113.950
SRR6049656Rhizomagastrodiae_C368-T07_good_117.150
SRR6049657Rhizomagastrodiae_C368-T07_good_113.630
SRR6049658Rhizomagastrodiae_C368-T04_good_115.480
SRR6049659Rhizomagastrodiae_C368-T04_good_111.620
SRR6049660Rhizomagastrodiae_C368-T01_good_113.440
SRR6049661Rhizomagastrodiae_C368-T04_good_113.780
SRR6049662Rhizomagastrodiae_C368-T01_good_121.770
SRR6049663Rhizomagastrodiae_C368-T01_good_119.160
SRR6049664Rhizomagastrodiae_C368-T10_good_118.300
SRR6049665Rhizomagastrodiae_C368-T10_good_118.300
SRP279888GastroGastrodia elata tuber 14.99
JuvenJuvenile tuber14.02
Mother_GastroMother tuber of Gastrodia elata 13.38
Mother_JuvenMother tuber of Juvenile 8.82