Gene detail

Detail information of GWHGAAEX004495/evm.TU.scaffold_15.108

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672146303\|ref\|XP_008797032.1\|	0	PREDICTED: exocyst complex component SEC8 [Phoenix dactylifera]
Swissprot	tr\|Q93YU5\|SEC8_ARATH	0	Exocyst complex component SEC8
trEMBL	tr\|J3MS47\|J3MS47_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB08G19260.1}
TAIR	AT3G10380	2.00E-165	subunit of exocyst complex 8

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	1832484	1923488	+

Transcript Sequence
>GWHTAAEX004495 CATGGCGTGAACCTAATGTCATTCGTGCATTTCCCCGACGGATGCTGCTGCGTGTTCTCTTATCGTTCTCGGAGACATAGGGTCCATGTCTCGGGTTCTTCTTCGTCTGTTCGCACGTCCTATTTAACCCGCAAGTAGCCGCTCAACTCTCCCCATTCGATCGCTCACGTCTTCTCTTCCTCTCAACCAACCGAGCTCTTCCGCACGATTCTCCCTTACCGCTCAACCCTCACGCATTAAGGGACGACGCCCAAGGCCTGCGACAGAGAAGCGGTAGAGGCGAACCTTGAAGCTGATGACAAAGGCTAAGAAGCTGACGGAAGGAGACGATTCCGACGCCTTAAAAAGAAACGCCCGCTTCGTCTACTGCGTCGCACGAATCGGCGACATCCGCTCAGCTCGATTTCTTTTGCGCACGACATCTTCTCGCAGCTGACATCTTCCGCACGATCCCTTCTCTCCTTTTCTGCTTCAGCACTCGGTTTTGGTAGAGTTCCTGATAACTGAGACATCAAGTTTGGGAGTGATTCATTTTGTTAAGTCAAACACAAAAGGTAAAACAACACAATGAGCTTCCGGCATGCTCAAGGAGGGATTTTTGATGGGCTGCCTATTCCTGCTGACAAGGCTTACTTGAGAGAAGGACTCTCTAGAATAGATGAAAGTTGGGCTGCCGCACGCTTTGACTCGTTGCCTCATGTGGTCCATATCTTGACCTCAAGGGATCGTGAGGGTGAAGTTCAGTTCTTGAAGGAACAAAGTGATCTAATTGAAGATGTTGTGGATGAAGTTGTTCACGCTTATCATCATGGTTTCAATAAAGCAATTCAAAACTACTCCCAAATTTTGCGGCTTTTTAGTGAATCTGCTGAAAGCATCTCCATATTAAAAGCTGGCATGGATGAAGCAAAGAAAAGGCTAAGTTCTCGCAATAAGCAATTGCGTCAAATGTGGTATCGGTCTCTTACCCTTCGTCACATATTATCTCTGATGGATCAAATTGATGGCGTAGCAAAGGTTCCTGTTCGAATTGAGAAACTTGTTGCAGAAAAACAGTTATATGCTGCGGTTCAGTTGCATGCTCAGTCATCCTTGATGCTTGAGAGGGAAGGTCTACAAGTGGTTGGTGCTCTTCAAGATGTTCGATCAGAATTAACCAAATTACGTGGGGTGCTTTTTTATAAAGTCTTGGAGGATCTACACAGCCATCTTTACAACAAGGGTGAATTTAGCTCAGTTAGCTTAAGCATGACAGAGAAAGATGATGAAGTGTCAACTGCAACTGCAATCGCATTCTCAGTAAACAGCGCACAGCCAATTTCAAAGAGAACCAGATCAAAGGCTGATAATCATTCAAGTGGCTTGGCATTTGGTGATGGATCTTTTCGAGCCATTTCTATTGATGGAGGTTCCTCCTTTGATGGTCATGATGATGAGAGCAGCCTTGATGCTACTTATGGCGGTATTTCTGATGGGAATGTGAAGGATGTTAGCAGTGTTTATCATCTAATTCCATTATGGCTTTCATCTGCCACTCCGGATGAGTTTGTTGAATCAGTGAGAAAAAATGATGCTCCACTCAGTGTCAGATATTTACAAACTTTGGTTGAATGCCTTTGTATGCTCGGAAAAGTTGCTGCTGCTGGTGCAATAATATGTCAACGGTTAAGACCAACCATTCATGAAATTATCACATCGAAAACTAAAACTTATGCCGCAAGGACTTCATCAACCTCAACCTCAAGTGCTGATCATCATGGCAGAACTGCTTTTTCTGAAATTTTTCTAAAAGGTGCATTTGGAAGCTATCACAGTCTTAAACAAAGGGTCAAGAATGGGGCACCTCTTTTGGGTCAACAGCCTATTATTGGCCCAGTATCTCCTACAATGACTCCTGTAGGAACAGCACAGTCTGCTGCTAGTGAGCTTCTTAGTTACATTTTGGATTCCATTACCCGGATACTTGAGAACCATGTTGTCGTTGGTGAACTTCTGGAATCAAAATCATCTCAGCAAGGTGATTTTATGAACGCACAAAGTTCTATGAACGGGGAAAGTAGCTGGAATCCAGATTCTGAATCATCTCAAACAACTGGAGGCTTTAGTGTAGCCTTCTCTTTGGCAGTCATGCAGAGTGAATGTCAACAACTCATTTGTGAAATATTGCGAGCAACTCCAGAAGCTGCGACTGCAGATGCTGCTGTTCAAACCGCCAGGCTTGCAAATAAGGTTCCTGTAAAGGAGAAAAGGGATGGAACTGATGGTCTTTCATTTGCTTTTCGTTTTACTGATCCAACCTCGTCTGTGCCCAACCAGGGTGTTAGCCAAGGATGGAGGAGGGGATCAAATGCACAACAGGAAGGATATGGTAGTGCAGCTGTGCTTTCTGAACAAGGTATTTACTTGGCAGCATCTGTCTATCGGCCAGTGCTTCAGTTTACTGATAAAATTGCATCAATGCTACCCCCAAAATATTCACAGCTTGGAAATGACGGCTTACTAGCATTCATTGAGAACTTTCTGAAGGACCATTTTCTGCCTGCAATGTTTGTGGACTACCGAAAATGTATACAACAGGCTATAGCAAGCCCAGCTGCTTTTAGACCAAGAGCTCATACTGCTATGTTGTATAATCCGTCAGTAGAGAAGGGGAGACCTGTGTTGCAAGGGTTGTTAGCTACTGACGTCTTAGCAAAAGAGGTGCTTAGCTGGGCAAGGCTGATACCAAAATATTCTAATGAGCTTATTGAATATGTCCAAACATTTCTTGAGCGTGCTTTAGAGAGATGCCGAACATCATATACAGAGGCTGTTCTTGAAAAGCAAAGTTATTTGCTTCTTGGAAGGAATGACGTTGAAAAGTTGATGAGACTAGATCCAGCGAATGCTTGTTTTCAAAACATCTCAGAACAACCCTTGGAAAACAATGTTTTAAATACAGAGAATATTGAAGCAGAGAGAGAGATGTGTAATCTTTTGCTGAGTTTAAGCCCAATCAAACAGGAAAATTTGATCCATGATGATAACAAAGTCATTTTATTAGCATCTCTTAGCGATTCCCTGGAATTTTTAGCGGATTCTGTTGAAAGGTTTGGAGAATCTATAGTAAGACCGGTTCCGAACTCCGAGGACAAGAATCATCTTTATCAAACTAGCCACCATAGAAGGACTCCAAGTGTTCTTACAAAAACTTTGGCATCTCTTGCGGACGAGTACAGAAAACTTGCAGTTGATTGTCTTAAGGTTCTGCGATTGGAAATGCAGTTAGAAACAATGTTCCACATGCATGAAATGGTCAGTAGGGAATACTTGGATGATCAGGATGCAGAAGAACCTGATGATTTTATCATATCACTGACGTCTCAGATTACTCGTAGGGATGAAGAAATAGCACCATATGTTGCTGACTGGAAGAGAAACTATATGTTTGGTGGCATTAGCAGCATTGCAGCTAACACTTCTGTTCAGGCCCTTGGTGAAATGAAATCGATTAATCTACTCGGTGTGCAACAGATATGCAGAAACTCTATCGCACTTGAACAGGCTCTTGCAGCTATACCCTCTATGGACAATGAAGCTGTTCAACCGAGACTAGACCGTGTTAGGACTTACTATGAGCTCTTAAACCTCCCATTTGAGGCATTGCTTGCTTTCATCACGGACCATGAGTACCTATTTACAGATGAAGAATACTCAACGCTTGTGAGAGTGAAGGTGCCAGGCAGAGAGATGCCTGCCGACGCGCAGCAGCGGGTGTCGGAGATTCTAAGGCATTAGATAATTACTTATTTGCCCTCGCTTTCTAGTGAAAAATTTTGTGAAAATAACGTTTGTTTTACTAAATAATTTTTTTATTTAAAGAGTTGTAATTATTGGGCTGTAGCATTATTTAAGCTATGTAGCTCTGCATTTATCATTGAAAATAAAATTTTCTATTGCAATTTTGGCAATCAGAGGAGCAGTTTGGGGAATCTGTATATACTCCTGATAATTATAACTCTTTGGATTTTATTTAAATACAATAGGTCCTTAGAGTGATATGAACCTTTTGGACACTGGTTTTATGTATCTCATACCTATTATAACAATCCTTATGATCATATTCAATGGATGGTTTAAAGGCTTGGAAGGGTGTATTGTGGCCATCATCCTCCATATGGCTTCATAATAGCATATTCTGTTGTGTTTAGG

Network for GWHGAAEX004495

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04048.13	Sec8_exocyst	23	158	3.10E-34

Protein Sequence

>GWHPAAEX004495
MSFRHAQGGIFDGLPIPADKAYLREGLSRIDESWAAARFDSLPHVVHILTSRDREGEVQFLKEQSDLIEDVVDEVVHAYHHGFNKAIQNYSQILRLFSESAESISILKAGMDEAKKRLSSRNKQLRQMWYRSLTLRHILSLMDQIDGVAKVPVRIEKLVAEKQLYAAVQLHAQSSLMLEREGLQVVGALQDVRSELTKLRGVLFYKVLEDLHSHLYNKGEFSSVSLSMTEKDDEVSTATAIAFSVNSAQPISKRTRSKADNHSSGLAFGDGSFRAISIDGGSSFDGHDDESSLDATYGGISDGNVKDVSSVYHLIPLWLSSATPDEFVESVRKNDAPLSVRYLQTLVECLCMLGKVAAAGAIICQRLRPTIHEIITSKTKTYAARTSSTSTSSADHHGRTAFSEIFLKGAFGSYHSLKQRVKNGAPLLGQQPIIGPVSPTMTPVGTAQSAASELLSYILDSITRILENHVVVGELLESKSSQQGDFMNAQSSMNGESSWNPDSESSQTTGGFSVAFSLAVMQSECQQLICEILRATPEAATADAAVQTARLANKVPVKEKRDGTDGLSFAFRFTDPTSSVPNQGVSQGWRRGSNAQQEGYGSAAVLSEQGIYLAASVYRPVLQFTDKIASMLPPKYSQLGNDGLLAFIENFLKDHFLPAMFVDYRKCIQQAIASPAAFRPRAHTAMLYNPSVEKGRPVLQGLLATDVLAKEVLSWARLIPKYSNELIEYVQTFLERALERCRTSYTEAVLEKQSYLLLGRNDVEKLMRLDPANACFQNISEQPLENNVLNTENIEAEREMCNLLLSLSPIKQENLIHDDNKVILLASLSDSLEFLADSVERFGESIVRPVPNSEDKNHLYQTSHHRRTPSVLTKTLASLADEYRKLAVDCLKVLRLEMQLETMFHMHEMVSREYLDDQDAEEPDDFIISLTSQITRRDEEIAPYVADWKRNYMFGGISSIAANTSVQALGEMKSINLLGVQQICRNSIALEQALAAIPSMDNEAVQPRLDRVRTYYELLNLPFEALLAFITDHEYLFTDEEYSTLVRVKVPGREMPADAQQRVSEILRH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006904	Biological Process	vesicle docking involved in exocytosis
GO:0000145	Cellular Component	exocyst

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.740
SRP064423	SRR2545915	Juvenile tuber	38.010
SRP108465	SRR5643513	five period of Gastrodia elata	32.880
	SRR5643514	five period of Gastrodia elata	36.760
	SRR5643515	five period of Gastrodia elata	33.900
	SRR5643524	five period of Gastrodia elata	38.320
	SRR5643525	five period of Gastrodia elata	33.340
	SRR5643528	five period of Gastrodia elata	41.990
	SRR5643658	five period of Gastrodia elata	38.820
	SRR5643659	five period of Gastrodia elata	30.890
	SRR5643660	five period of Gastrodia elata	37.290
	SRR5643661	five period of Gastrodia elata	35.120
	SRR5643662	five period of Gastrodia elata	38.880
	SRR5643663	five period of Gastrodia elata	30.210
	SRR5643664	five period of Gastrodia elata	33.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.150
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.330
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.640
SRP279888	Gastro	Gastrodia elata tuber	44.38
	Juven	Juvenile tuber	48.02
	Mother_Gastro	Mother tuber of Gastrodia elata	42.57
	Mother_Juven	Mother tuber of Juvenile	57.16