Gene detail

Detail information of GWHGAAEX004500/evm.TU.scaffold_15.113

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|258541763\|ref\|YP_003187196.1\|	6.00E-47	ribosome biogenesis GTP-binding protein YsxC [Acetobacter pasteurianus IFO 3283-01]
KOG	KOG2486	2.00E-112	Predicted GTPase
nr	gi\|743789854\|ref\|XP_010923019.1\|	0	PREDICTED: uncharacterized protein LOC105046196 [Elaeis guineensis]
Swissprot	tr\|O81004\|Y2287_ARATH	4.00E-22	GTP-binding protein At2g22870
trEMBL	tr\|M0TJQ3\|M0TJQ3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P22170_001}
TAIR	AT5G58370	2.00E-112	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	2048955	2071850	+

Transcript Sequence
>GWHTAAEX004500 TTCAAAGTGTTAGCCATAGATAGCCACAGTAATGGGTTTAGGGTTTAGTGGTTTATTGTAGAGCACGTAAGGATCGCGTGAATAAAAGAAATCTCCGCTGCTGATTTCTTCTTGCACCTCTTGGTGATTCAGAAAAACACTTATCATAGCTTGATTGGGTTTCTAATTATCGATCCAATGCTCAACCTATCAATTCTTAAACTTTCGATGGCTGCAATCTATTATTCCAGTGGCTAATCATGATCTAGAACAGAGTTTGAATACAAATCGCGTCATTACTAGCTGTACTCTACTTCCCATCTTTTCTGTTCGTACTATTGTTTAATTTATACGCTCTTCATAGAATCATTAGAATGTCACTTGGAATTCGTTTAAAGAGAAACGATATTCGTGAATCCGTTGATGGTAGGATGAAGAATAAGGGCATAGCAGCTGCGAAAAGATGTCGGGAGAAATGTGAGATGGAACATGCTGATGTTGAGGTCATTGCTAGGGCTGAAGAATTAGGTCGTTTATCGAATGAGAGTGTGAAAGGAAGAAAATTGCGGCCAAACATCAAGAGGGACGAGAGAAGATTTGATAGGGAGAAAGGAAATGATTCCCGGGTATGTCGTCTGAGAATTAGGCGATCTGATGTTCCCGAGGATTCAAGAAAGGAAAGGAAGCCTTTGATCAGGGGGAGAAAGGAATGGAGCAATGATGCTAATTTTGCGAAAAAGGGTAAAGCTTATGATTCAAGATCGCTTACACGGAAACCCATTAAAACAATTCGAAAGGTTATAGATGGAGATGTTTGTGATTTTGAGCAGAATGGCAGAGGTTTCTATAGAAGAAAAGACAAATTCTTGAAAACTGAAGCACCTGCTGGAAATATTAAGTTGAAAAGGAGAAAATTAGATGGGGCATTTACTGAGAATGGCCAGTTCCGTGGTGCTAAGCAGGATGGATTGGAGAAACATGCAACTTCTAATGATGGAGAAAGCCAAATTTCTGAACAAAAACATTTTAGACGCCCAAATCGAGTGCTGGACAAAACTGGCAAGAAGATTAGAGTTCAAACAAAACCTGCGGAAAATGGCTCAACTGAGAACAGTGCTTCTAAGAAGACCAGGAGGCGGGTTATGAAGTTAGATCCTTATGATATTTCAAATAAACGAATGGTGGATAGCGTTCCTAATAATGACATAGCTGTGGAGAAAGAAACTGTGGTTTCAATGAATGCTCAGTTTCGGGCGATACAACCAAGTGATGAAATTCTTTCATTTGTGGAAGATAATCTGCTGGGTCGCAGGCGTTTGATTGAATTGAAAAATGCTGGCTACAATGTGAAGCTATCAGCTCCATTAGATAACTTACCATTTTCTACCGCATTAGAGAGAGAAAAGATTGAAGAGAATGTATTTCGAAATAAATTGAAGTTTTTTGCTGCTGCAAAGACTTCATCATCTTTTCCGCCTCCAACACTCCCCGAGATAGCATTTGCAGGTAGTACAATTGTTTTGGTTCATTTAGGTAGGTCAAATGTTGGGAAGTCTTCATTGCTAAATGCGCTTACCAGACAATGGGGTGTGGTGCGCACATCGGATAAACCTGGGCTTACTCAGACCATAAATTTTTTTAAGCTAGCCTCAAAGCTTTGTCTGGTTGATCTTCCTGGTTATGGTTTTGCTTATGCTAAAGAAGAGGTCAAAGAAACATGGGAGGAGCTTGTGAAGGAGTTTGTCAGCACTCGGGTTGGATTACAGAGGGTTTGTCTTCTAATCGATACTAAATGGGGAATGAAAGCAAGAGACTTTGAGCTCATAGAGTTGATGGAACGATCCAAAACACCATACCAAGTTGTCTTGACAAAGACTGACATCGTTTTCCCCATTGATGTCGCTAGACGTGCCATGCAAATCCAAGAGAAATTGAAGAGTAACAAGTCAATCATTGACCCAGTGATAATGGTGAGTTCCAAGTCAGGCGCCGGAATTCGCAACCTTAGAAGTGTGCTCGCTAAAATTGCACGTTTTGTGAAACCATAAATGCGGTAAAATACAAAAAATAAATTACAAAAATGCTGCTATTTCGTTTATTTTCGTAAAAATATTTTTTTTTCTATTTTTCATTCATTTTTTGCTCGCATTATATTTTAACTTTCTCAATTTTCTTATTTAACCCTGGATATTTGACATTTACAAATCTAGCACCAGATTTTACCC

Network for GWHGAAEX004500

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01926.22	MMR_HSR1	386	500	2.50E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.130
SRP064423	SRR2545915	Juvenile tuber	12.670
SRP108465	SRR5643513	five period of Gastrodia elata	14.350
	SRR5643514	five period of Gastrodia elata	14.600
	SRR5643515	five period of Gastrodia elata	11.530
	SRR5643524	five period of Gastrodia elata	11.740
	SRR5643525	five period of Gastrodia elata	2.870
	SRR5643528	five period of Gastrodia elata	2.560
	SRR5643658	five period of Gastrodia elata	2.740
	SRR5643659	five period of Gastrodia elata	13.020
	SRR5643660	five period of Gastrodia elata	14.980
	SRR5643661	five period of Gastrodia elata	12.890
	SRR5643662	five period of Gastrodia elata	12.370
	SRR5643663	five period of Gastrodia elata	14.000
	SRR5643664	five period of Gastrodia elata	12.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.280
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.000
SRP279888	Gastro	Gastrodia elata tuber	10.21
	Juven	Juvenile tuber	21.10
	Mother_Gastro	Mother tuber of Gastrodia elata	9.00
	Mother_Juven	Mother tuber of Juvenile	16.80