Detail information of GWHGAAEX004505/evm.TU.scaffold_15.122
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|384146004|ref|YP_005528820.1| | 5.00E-124 | alpha-galactosidase [Amycolatopsis mediterranei S699] |
| KOG | KOG2366 | 0 | Alpha-D-galactosidase (melibiase) |
| nr | gi|743843151|ref|XP_010937996.1| | 0 | PREDICTED: alpha-galactosidase isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q42656|AGAL_COFAR | 8.00E-172 | Alpha-galactosidase (Precursor) |
| trEMBL | tr|M0T7D0|M0T7D0_MUSAM | 0 | Alpha-galactosidase {ECO:0000256|RuleBase:RU361168} |
| TAIR | AT3G56310 | 0 | Melibiase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 2348879 | 2399931 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004505
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16499.4 | Melibiase_2 | 59 | 322 | 1.70E-81 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH27 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07407 | E3.2.1.22B, galA, rafA | Metabolic pathways | map01100 |
| Galactose metabolism | map00052 | ||
| Glycerolipid metabolism | map00561 | ||
| Sphingolipid metabolism | map00600 | ||
| Glycosphingolipid biosynthesis - globo and isoglobo series | map00603 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.180 |
| SRR2545915 | Juvenile tuber | 15.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.510 |
| SRR5643514 | five period of Gastrodia elata | 10.020 | |
| SRR5643515 | five period of Gastrodia elata | 9.270 | |
| SRR5643524 | five period of Gastrodia elata | 8.820 | |
| SRR5643525 | five period of Gastrodia elata | 12.380 | |
| SRR5643528 | five period of Gastrodia elata | 11.320 | |
| SRR5643658 | five period of Gastrodia elata | 12.690 | |
| SRR5643659 | five period of Gastrodia elata | 14.590 | |
| SRR5643660 | five period of Gastrodia elata | 16.140 | |
| SRR5643661 | five period of Gastrodia elata | 14.530 | |
| SRR5643662 | five period of Gastrodia elata | 12.200 | |
| SRR5643663 | five period of Gastrodia elata | 15.990 | |
| SRR5643664 | five period of Gastrodia elata | 14.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.510 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.960 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.60 |
| Juven | Juvenile tuber | 14.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.74 | |
| Mother_Juven | Mother tuber of Juvenile | 10.77 |