Gene detail

Detail information of GWHGAAEX004507/evm.TU.scaffold_15.124

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|146298365\|ref\|YP_001192956.1\|	2.00E-50	two component regulator [Flavobacterium johnsoniae UW101]
nr	gi\|743788788\|ref\|XP_010922754.1\|	0	PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Elaeis guineensis]
Swissprot	tr\|Q9LRT1\|Y3804_ARATH	0	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 (Precursor)
trEMBL	tr\|A0A067JQ53\|A0A067JQ53_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP21644.1}
TAIR	AT3G56370	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	2441320	2444927	-

Transcript Sequence
>GWHTAAEX004507 CTTCAACTCAACCCTGCGACGGCGGCCTCATCACCGTCTCTCCAATGCTCAATTCCTTCTCATAAATCCAACAGATCCATGAAAGTTCGTTTCTTCGCCATTCTTCTCTTCCTCTCCACCGCCTCCGCCTCCGCCTCCGATACCTCCATTCCAACCCTAAACGGCGATCTCCTCGGCCTCATCGTCTTCAAATCCGATCTCTCCGATCCTCATTCGAAGCTGGAGTCATGGAATGATGATGATGACGACCCCTGCGGTTGGGTCGGCGTCAACTGCGATTCTACGACCCGCCGCGTCATTGAACTCTCCCTGAACGAACTCGGCCTCTCCGGAAGGATCAGCCCTCGCGGGCTTCTCCAGCTTACTTCTCTCCAAAGCCTTTCCCTCTCCGGCAACAATTTCTGCGGCGAACTCAGCTCTGACCTGACCAGCCTCGAGAATCTCCGCACAGTCGATTTCAGCCGCAATAATCTTTCCGGGCAAATCCCGGCCGCTTTTTTCAGGCAATGTCAGTCTCTCCGGTCGGTTTCGCTCGCCGCAAATCGATTATCCGGCGAGATTCCGGCGAGCATCGGCAATTGTGCGACACTTGCGTCTTTGAATCTATCGGCGAATTGGATTTCCGGGAGTCTGCCGAGGGAACTTTGGTCTTTGGATGGTCTTAAGGTTATTGATCTCTCTGGCAATTTCCTGGTTGGGGGAATACCCAGCGGAATCGGCCGGATGCCTAATCTGAGAGCGCTTAGTTTGAAAGGAAACCGGCTCTCAGGGGTTTTGCCTGATGACATTGGGAATTGTTTGCTGCTGCGTTCAATCGATTTGGGGGAGAATTTCCTCTCTGGAGCTCTCCCGGGAGCAATGCGGAGGCTTACCATGTGCGATTTTCTCAGCTTGGCGTCTAACGAGTTCGCCGGTGAACTTCCGGATTGGCTCGGAGAAATGAAGAGTTTGCAAACTTTGGATTTATCCGGCAATGGATTCACCGGTCCGGTTCCGGATTCCATCCGCCGTTTGCGGTTCTTGAATCGACTGAACCTTTCTGAAAATGGTTTGACCGGCAGCTTACCGGACTCCTTGGCTAGTTGCAGAAGTCTCACTGAAGTGGATTTCAGCAGGAATTCGTTGACGGGAAGTCTTCCTTCATGGCTATTTCAAATGAGCCTTTCGAAAATTCTGGTTTCTGGGAACAGTCTCAGTGGGCTTTTTCGAATTTCCTCTGCCTCAGATCAGACGCTGCTGTTCTTGGATTTATCCGCAAATGCATTTTCTGGCGTGATTCCAGCGGAAATTGGGAGAATGAAGCTTTTGGAAGCGGTTGATCTAAGCTCAAACCAATTCAATGGCAGCATTCCGCGGGAGATCGGCGAGTCTGTTTCTTTGAAGGATCTGAATCTCGAAAGAAATCTTCTTACCGGCGGCATTCCAACCCAGATTGGAAACTGTTCTTCTCTAACATCTCTGGTTCTTTCACACAACAACATAACAGGCACAATTCCTACAAGCCTAGCCAAGCTCACAAGCCTTGAGATCATAGACCTGTCCCACAACCGCCTCTCAGGAAAGCTTCCCAAAGAGCTATCAGCGCTGACGCAGCTCCGATATCTGAACATCTCCCACAATATTTTCTCCGGCGAAATTCCACCGCTCCTGCTGTGCAAAATCCCCCTTTCTTCTCTCTCTGACAACCCCGGCCTGTGCGGCCCGGCCGTGAATCGCTCCTGCACCGTCGTCCTCCCCAAGCCCATCGTCCTCAACCCCAACTCATCCTCATCCTCGGCATTCGCCTCGGATGCCGCCCGGCACAAGAAGATCATCCTCAGCGTATCCGCTCTCGTCGCGATCGCTGCCGCCGTCTTCATCGCCGTAGGCGTCGTGATCGTCACCGTTCTGAATCTGCGCGTCCGACCGGCCTCCTCCCACACCGCCTCTGCACTCCGCATATCCGATGAGTACCTCAGTGGATCACCGGTGACCGACACAAATTCCGGGAAGCTGGTGATGTTTGCCGCTGGCGACGACCCCGACTTTAGTGCAGGAGCGCACACGGTTCTCAACAGGGACTGCGAGTTGGGCCGCGGCGGCTTCGGCACGGTCTACAGGGCCGTGCTCCGGGATGGCAGGCCGGTGGCCATCAAGAAGCTTACTGTCTCCAGCCTCGTGAAATCCCGTGAGGATTTTGAAGGGGAGGTCAGGAGGATTGGAGCGGCGAAGCACCGGAATCTGGTCGGCCTCGAAGGGTACTACTGGAGCCAGTCCCTGCAGCTCCTCATCTATGAGTTTGTTCCCGGTGGGAGCCTGTTCAAGCGCCTGCACGAGGCCCGGCCGGGTTCAAGCTGCCTCTCGTGGCGGGAGCGTTTTGATGCGATTCTCGGGACGGCGAGGGGACTGGCGCACCTTCACCGGCGCGGTGTGATCCACTACAATTTGAAATCCAGCAATGTGCTCGTCGACGATGCCTCCGGGGAGGCTAAGGTGGCGGACTGCGGGCAGGCGAGGCTGTTGCCGATGCTTGACCGGTATGTGCTGAGCAGCAAAATTCAGAGCGCCCTCGGTTACATGGCACCGGAGTTCGGATGCCGGGCGGTGAAGGTGACGGAGAAGTGTGACGTATACGGGTTCGGCGTGCTAGTTCTGGAGGTTGTGACGGGGAGGAGGCCGGTGGAGTACGCGGCGGACGACGTGGTGGTTCTGTGCGACTCGGTTCGGGGGGCGGTTGACGAGGGGAGGGGGGAGGAGTGCGTCGACGGGAGGCTCGAAGGTAAGTTCTCGGCAGACGAGGCGGTGCCCATCGTGAAGCTCGGCTTGATCTGCACTTCGCAGGTGCCCTCGAACCGGCCTGAGATGGGCGAGGTGGTGAAGATACTGGAGCTGATCAGGTGCCCTCCGTGCTCATCATGATCAGGTAAGATCAAATCGAGTTCGAATCGAGTCAGCTCAGACTCGAACTCGAAATTTTTGAGTTGAGCTTGAGTCATTTCGAGTGAGTCAACAGAGTTCGAGTCAAATCGTTCGACTTGAACTCGACTCGAAAATATTAAGTCGGAATGTTTAAATTCGAGTTTCGAATTTCAAGTGAATTTGTCAGCACTTTTTGATGTGTTTTGAATTGAGTTTTGCAGCAGTGCCTTGCAGTAAGTTAAAATTGTATGAAAATATACAGTTCTGAAGGAAAGAGAGCACGGAATGAAATTTTTCACACATTTTGAGCACTCTCCCTCTCTTCCTCGCGTGTTTTCATACAATTTTAGCTGTTTGTATGGCAGCATAACGTTTTCCTCGTATTTTAGGAAGATGAGAGGCTTTGGAGGAATGATGGTTGCATTTCTTAATTGAATGAAATTCCTTTTATGTTTTTAATTTTAGAAATCTTAAAGTTTGTGGATTTTGAGGCCTCCAAGTCAGCTTTATACCTCAAATAGTAGTGTTTGGGAAAATTTCAGAATTAGATCAACCGCTAATCTCTCTCTAAATCTGTTGGGAACTGTAGCAATAGCCTAAGGTTGACTGAAGGATTAATAATATTTATGGCCATTTTTTATTGGG

Network for GWHGAAEX004507

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.11	LRRNT_2	28	67	8.20E-12
PF13855.5	LRR_8	146	203	1.70E-06
PF13516.5	LRR_6	290	303	1.4
PF13855.5	LRR_8	456	514	1.40E-12
PF00069.24	Pkinase	662	863	8.00E-35

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.150
SRP064423	SRR2545915	Juvenile tuber	1.400
SRP108465	SRR5643513	five period of Gastrodia elata	1.410
	SRR5643514	five period of Gastrodia elata	2.060
	SRR5643515	five period of Gastrodia elata	1.020
	SRR5643524	five period of Gastrodia elata	1.490
	SRR5643525	five period of Gastrodia elata	2.400
	SRR5643528	five period of Gastrodia elata	1.910
	SRR5643658	five period of Gastrodia elata	5.610
	SRR5643659	five period of Gastrodia elata	0.360
	SRR5643660	five period of Gastrodia elata	0.280
	SRR5643661	five period of Gastrodia elata	0.750
	SRR5643662	five period of Gastrodia elata	0.300
	SRR5643663	five period of Gastrodia elata	0.300
	SRR5643664	five period of Gastrodia elata	0.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.800
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.410
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.120
SRP279888	Gastro	Gastrodia elata tuber	0.12
	Juven	Juvenile tuber	0.27
	Mother_Gastro	Mother tuber of Gastrodia elata	0.05
	Mother_Juven	Mother tuber of Juvenile	0.12