Gene detail

Detail information of GWHGAAEX004509/evm.TU.scaffold_15.127

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743788797\|ref\|XP_010922756.1\|	PREDICTED: vacuolar-sorting receptor 1-like [Elaeis guineensis]
Swissprot	tr\|P93026\|VSR1_ARATH	Vacuolar-sorting receptor 1 (Precursor)
trEMBL	tr\|M0RTR5\|M0RTR5_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P19850_001}
TAIR	AT3G52850	vacuolar sorting receptor homolog 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	2477141	2488661	-

Transcript Sequence
>GWHTAAEX004509 CCGCACACGTTTCGATCGAATCGGCGGTCGGTTGCCGCGTCAGCCTTACTATAAATCCGACCACGTGAACCGCGCGACCCACTGTGCGTCGATATGCTTCTACAGGAAAAAAAGGGTAATTTTAGAAGAAGAAGATGGTAAAAGCATCAGCATAATCTCTATCTATTACCTCCTCGAAACCCTTGCAAATCTCCACTGGAAGAAACGCAGATTTGTAAAAGTCAATCGTTCTAGATTAGTTTCTGCTTCCACTTCTCCCAATCTCGCGCCGTTCATCAGTCTTTAATCTCACTGTCTGGATTTCAAGATATTTCAGGGCAAGTGCTCTCTGTTTCCTCCCTCCTTAGCAACCGGGTTTGACTAGGGTTTCACGGCTGCTGAATCGATGGTCTCTGAAGCAAAAATGAGAGGAGAGATTTGGTTTTTGGCATCGTTGTTTGTTCTGTGTGGTTCGTGTTTGGGGAGATTTGTGGTGGAGAAGAACAGCTTGAAAGTGACATCTCCTGACGCATTGAAAGGGGTGTATGAGTGCGCCATTGGGAATTTCGGGATTCCTCAGTATGGTGGGACTATGATTGGTTTTGTTTCTTATCCAAAAAAAAATAGGAAAGCTTGTAAGAGCTTTCAGGAATTTGATATCTCTTTCAAGTCGAAGCCAGGAGGCTTTCCAACATTTATTCTTGTTGACAGAGGAGATTGCTTTTTCACAACCAAAGCCTGGAATGCACAGAATGCAGGAGCTGCTGCAATACTTGTTGCTGACGACAAGGAGGAGCCGTTGATCACAATGGACACACCTGAAGAAGACACTGGCAGAGGAGATTATTTGCAAAATATATCCATCCCATCTGCACTTATTAACAAAAACTTTGGAGATAGGCTTAAGAAAGCTCTAGAGGATGGTGAAATGATTAGTGTCAATCTTGATTGGAGGGAATCCTTACCTCATCCTGATGACCGCGTTGAGTACGAATTTTGGACTAACAGCAATGATGAATGTGGTGCGAAATGTGACAGCCAGATAGACTTTGTTAGGAGTTTTAAAGGTGCAGCACAAATACTAGAGAAGAAGGGTTACACTCAATTTACACCACATTATATAACATGGTATTGTCCTGAAGTTTTTCTTTTGAGCAAACAGTGCAAATCACAATGCATCAATCATGGAAGGTACTGCGCACCCGATCCTGAACAGGATTTTCATAAAGGGTATGATGGGAGGGATGTTGTGATCCAGAATCTCCGACAGGTCTGCTTGTTTAAGATTGCCAATGAAAGTGGAAAGCCATGGCTTTGGTGGGATTATGTGACGGACTTCTCCATTAGGTGTCCCATGAAAGAAAAGAGATATACCAAGGAATGCGCTGAAGATGTGATAAAGGCATTAGGTGTTGATTTGAAGAAGATAAATAATTGTATTGGAGATCCTGAGGCTGATGAAGACAATCCAGTGCTGAAGGCTGAACAAGATGCACAGATTGGCAAGAAGGCCCGTGGTGATGTTACCATCCTGCCTACGCTTGTTATAAACAACCGACAATACAGAGGCAAGTTGGACAAAAGTGCTGTTCTTAAAGCAATCTGTGCTGGATTTCAAGAAACAACAGAGCCAGCTGTGTGCTTAAATGAAGACATACAGACGAATGAATGCTTAGAAAATAATGGTGGGTGCTGGAAAGACAAGGCAGCTAATGTTACTGCATGCAAGGACACATTCCGAGGAAGAGTATGTGAATGCCCTGTTGTCAATGGTGTACAGTTTATTGGTGATGGGTATACCCATTGTAAAGCTTCTGGATCTGGAAGATGTGGAATTAATAATGGTGGCTGTTGGAAGGGAACTCAAGATGGCCTAACCTTTTCTGCTTGTGTGGAAAATCAAGCAATTGAATGCAAGTGTCCTCATGGTTTCAAGGGCGATGGAGTTAAAACTTGTGAAGATGTGGATGAATGCAAAGATAAAATGGCCTGCCAATGCCGAGATTGCAAATGTAAGAACACATGGGGAAGTTATGAATGTAGCTGTCGCGGTGATCTTCTGTATATGGAAGAGCATGATACCTGTATAAGCAAGAAGTCTTCAACAGAGTTCAGTTGGAGCTTCTTATGGGTCATTTTCCTGGGATTAGCTGCTGCAGGAATCGGAGGATATGCAGTCTACAAATACAGGATTAGGCGATACATGGACTCTGAGATTCGTGCCATTATGGCTCAGTATATGCCGTTGGACAGCCATGAAGAAACTGCAGCAGCAACTCGCACTCACTATTCTGATCTTTAAAAGTAAATATAATCATCATGCAGTGTTCATATTTCTGAGATGTGGGGATGAAGTTTATTTAAATGTATTCTCTTAGATTTAGATGTAAGTCTAGTTTTTGAACAGATTAATGCCAAGCAGTGCGGCTTATTGTAGTAATGTAATAAAATAAATGATACCTTATATATGAGGTGTTTACTGAGCCTTCTGCTCGTCTGCTGCTAATTTTGTTCTAAACAAATTAAACATGAATTAGAATGACAGGATTAAGGCTTAGCTTGAGCTTGAGTTAATGAGTTTTGTTATTGTTCTGTATTAAGACTAATAGAGGCCCAAATCTCAAATACAACTATTGAGAACAATGTAGTTAAGAAGAGGTAAGAGGCTCAAATATCTTGGTTTAACTATTCAAATAAT

Network for GWHGAAEX004509

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02225.21	PA	97	166	2.20E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005509	Molecular Function	calcium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	186.480
SRP064423	SRR2545915	Juvenile tuber	266.570
SRP108465	SRR5643513	five period of Gastrodia elata	169.180
	SRR5643514	five period of Gastrodia elata	134.210
	SRR5643515	five period of Gastrodia elata	157.140
	SRR5643524	five period of Gastrodia elata	140.300
	SRR5643525	five period of Gastrodia elata	116.480
	SRR5643528	five period of Gastrodia elata	105.020
	SRR5643658	five period of Gastrodia elata	112.390
	SRR5643659	five period of Gastrodia elata	148.690
	SRR5643660	five period of Gastrodia elata	133.980
	SRR5643661	five period of Gastrodia elata	143.810
	SRR5643662	five period of Gastrodia elata	96.940
	SRR5643663	five period of Gastrodia elata	123.420
	SRR5643664	five period of Gastrodia elata	101.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	145.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	99.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	145.330
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	145.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	120.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	130.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	126.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	146.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	115.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	104.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	137.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	137.640
SRP279888	Gastro	Gastrodia elata tuber	139.75
	Juven	Juvenile tuber	135.29
	Mother_Gastro	Mother tuber of Gastrodia elata	99.89
	Mother_Juven	Mother tuber of Juvenile	100.97