Detail information of GWHGAAEX004511/evm.TU.scaffold_15.129
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|374333758|ref|YP_005086886.1| | 1.00E-100 | tyramine oxidase [Pseudovibrio sp. FO-BEG1] |
| KOG | KOG1186 | 0 | Copper amine oxidase |
| nr | gi|743760116|ref|XP_010935528.1| | 0 | PREDICTED: primary amine oxidase [Elaeis guineensis] |
| Swissprot | tr|Q43077|AMO_PEA | 0 | Primary amine oxidase (Precursor) |
| trEMBL | tr|M0TZC2|M0TZC2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P11130_001} |
| trEMBL | tr|M0TZC2|M0TZC2_MUSAM | 7.00E-12 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P11130_001} |
| TAIR | AT1G31670 | 0 | Copper amine oxidase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 2498617 | 2503897 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004511
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02727.15 | Cu_amine_oxidN2 | 20 | 107 | 1.50E-19 |
| PF02728.15 | Cu_amine_oxidN3 | 114 | 215 | 1.40E-20 |
| PF01179.19 | Cu_amine_oxid | 240 | 381 | 4.70E-43 |
| PF01179.19 | Cu_amine_oxid | 388 | 622 | 4.30E-65 |
| PF02727.15 | Cu_amine_oxidN2 | 662 | 744 | 2.60E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0009308 | Biological Process | amine metabolic process |
| GO:0048038 | Molecular Function | quinone binding |
| GO:0008131 | Molecular Function | primary amine oxidase activity |
| GO:0005507 | Molecular Function | copper ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.140 |
| SRR2545915 | Juvenile tuber | 1.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.230 |
| SRR5643514 | five period of Gastrodia elata | 3.450 | |
| SRR5643515 | five period of Gastrodia elata | 4.280 | |
| SRR5643524 | five period of Gastrodia elata | 4.120 | |
| SRR5643525 | five period of Gastrodia elata | 2.840 | |
| SRR5643528 | five period of Gastrodia elata | 2.040 | |
| SRR5643658 | five period of Gastrodia elata | 2.050 | |
| SRR5643659 | five period of Gastrodia elata | 3.980 | |
| SRR5643660 | five period of Gastrodia elata | 3.450 | |
| SRR5643661 | five period of Gastrodia elata | 4.750 | |
| SRR5643662 | five period of Gastrodia elata | 5.570 | |
| SRR5643663 | five period of Gastrodia elata | 6.600 | |
| SRR5643664 | five period of Gastrodia elata | 4.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.980 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.720 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 56.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 34.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.62 |
| Juven | Juvenile tuber | 12.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.80 | |
| Mother_Juven | Mother tuber of Juvenile | 15.86 |