Detail information of GWHGAAEX004512/evm.TU.scaffold_15.130
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|374333758|ref|YP_005086886.1| | 3.00E-100 | tyramine oxidase [Pseudovibrio sp. FO-BEG1] |
| KOG | KOG1186 | 5.00E-179 | Copper amine oxidase |
| nr | gi|695049094|ref|XP_009412472.1| | 0 | PREDICTED: primary amine oxidase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q43077|AMO_PEA | 0 | Primary amine oxidase (Precursor) |
| trEMBL | tr|M0TM84|M0TM84_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P03320_001} |
| TAIR | AT4G14940 | 5.00E-179 | amine oxidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 2503921 | 2507046 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004512
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02728.15 | Cu_amine_oxidN3 | 7 | 76 | 8.20E-15 |
| PF01179.19 | Cu_amine_oxid | 103 | 279 | 5.10E-56 |
| PF01179.19 | Cu_amine_oxid | 275 | 487 | 7.10E-59 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0009308 | Biological Process | amine metabolic process |
| GO:0048038 | Molecular Function | quinone binding |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0008131 | Molecular Function | primary amine oxidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.860 |
| SRR2545915 | Juvenile tuber | 4.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.740 |
| SRR5643514 | five period of Gastrodia elata | 12.590 | |
| SRR5643515 | five period of Gastrodia elata | 12.010 | |
| SRR5643524 | five period of Gastrodia elata | 12.100 | |
| SRR5643525 | five period of Gastrodia elata | 2.720 | |
| SRR5643528 | five period of Gastrodia elata | 1.720 | |
| SRR5643658 | five period of Gastrodia elata | 1.000 | |
| SRR5643659 | five period of Gastrodia elata | 9.370 | |
| SRR5643660 | five period of Gastrodia elata | 11.030 | |
| SRR5643661 | five period of Gastrodia elata | 13.180 | |
| SRR5643662 | five period of Gastrodia elata | 5.730 | |
| SRR5643663 | five period of Gastrodia elata | 8.410 | |
| SRR5643664 | five period of Gastrodia elata | 8.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 44.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 39.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 44.240 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 46.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 44.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 62.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 56.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 42.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 42.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.89 |
| Juven | Juvenile tuber | 42.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 39.03 | |
| Mother_Juven | Mother tuber of Juvenile | 43.11 |