Detail information of GWHGAAEX004513/evm.TU.scaffold_15.131


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428320041|ref|YP_007117923.1|4.00E-5150S ribosomal protein L17 [Oscillatoria nigro-viridis PCC 7112]
KOGKOG32802.00E-80Mitochondrial/chloroplast ribosomal protein L17
nrgi|672169233|ref|XP_008804641.1|2.26E-91PREDICTED: 50S ribosomal protein L17, chloroplastic [Phoenix dactylifera]
Swissprottr|O80363|RK17_TOBAC1.00E-8250S ribosomal protein L17, chloroplastic (Precursor)
trEMBLtr|B7FGK1|B7FGK1_MEDTR4.00E-86Uncharacterized protein {ECO:0000313|EMBL:AFK44530.1}
TAIRAT3G542102.00E-80Ribosomal protein L17 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001925082192525313+
Transcript Sequence

Network for GWHGAAEX004513

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01196.18Ribosomal_L171152114.30E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02879RP-L17, MRPL17, rplQ Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.440
SRR2545915Juvenile tuber50.280
SRP108465SRR5643513five period of Gastrodia elata34.540
SRR5643514five period of Gastrodia elata37.060
SRR5643515five period of Gastrodia elata47.100
SRR5643524five period of Gastrodia elata37.940
SRR5643525five period of Gastrodia elata14.810
SRR5643528five period of Gastrodia elata18.050
SRR5643658five period of Gastrodia elata14.010
SRR5643659five period of Gastrodia elata30.860
SRR5643660five period of Gastrodia elata24.120
SRR5643661five period of Gastrodia elata32.200
SRR5643662five period of Gastrodia elata37.170
SRR5643663five period of Gastrodia elata29.710
SRR5643664five period of Gastrodia elata25.060
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_132.960
SRR6049655Rhizomagastrodiae_C368-T10_good_142.430
SRR6049656Rhizomagastrodiae_C368-T07_good_140.170
SRR6049657Rhizomagastrodiae_C368-T07_good_128.350
SRR6049658Rhizomagastrodiae_C368-T04_good_127.720
SRR6049659Rhizomagastrodiae_C368-T04_good_129.520
SRR6049660Rhizomagastrodiae_C368-T01_good_137.790
SRR6049661Rhizomagastrodiae_C368-T04_good_130.040
SRR6049662Rhizomagastrodiae_C368-T01_good_135.890
SRR6049663Rhizomagastrodiae_C368-T01_good_139.620
SRR6049664Rhizomagastrodiae_C368-T10_good_134.140
SRR6049665Rhizomagastrodiae_C368-T10_good_134.140
SRP279888GastroGastrodia elata tuber 28.51
JuvenJuvenile tuber25.19
Mother_GastroMother tuber of Gastrodia elata 10.26
Mother_JuvenMother tuber of Juvenile 11.19