Detail information of GWHGAAEX004516/evm.TU.scaffold_15.134
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-144 | FOG: PPR repeat |
| nr | gi|672175795|ref|XP_008807964.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g19280 [Phoenix dactylifera] |
| Swissprot | tr|Q6NKW7|PP164_ARATH | 1.00E-144 | Pentatricopeptide repeat-containing protein At2g19280 |
| trEMBL | tr|M0RW28|M0RW28_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P01200_001} |
| TAIR | AT2G19280 | 3.00E-144 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 2601566 | 2621134 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004516
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 345 | 375 | 1.60E-06 |
| PF01535.19 | PPR | 384 | 403 | 0.67 |
| PF12854.6 | PPR_1 | 407 | 437 | 1.30E-06 |
| PF13041.5 | PPR_2 | 444 | 491 | 7.90E-11 |
| PF13041.5 | PPR_2 | 515 | 563 | 9.80E-16 |
| PF13041.5 | PPR_2 | 591 | 637 | 4.60E-12 |
| PF12854.6 | PPR_1 | 655 | 687 | 1.00E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.050 |
| SRR2545915 | Juvenile tuber | 4.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.140 |
| SRR5643514 | five period of Gastrodia elata | 3.410 | |
| SRR5643515 | five period of Gastrodia elata | 3.770 | |
| SRR5643524 | five period of Gastrodia elata | 3.680 | |
| SRR5643525 | five period of Gastrodia elata | 3.820 | |
| SRR5643528 | five period of Gastrodia elata | 3.250 | |
| SRR5643658 | five period of Gastrodia elata | 2.830 | |
| SRR5643659 | five period of Gastrodia elata | 6.270 | |
| SRR5643660 | five period of Gastrodia elata | 5.490 | |
| SRR5643661 | five period of Gastrodia elata | 5.600 | |
| SRR5643662 | five period of Gastrodia elata | 5.540 | |
| SRR5643663 | five period of Gastrodia elata | 5.580 | |
| SRR5643664 | five period of Gastrodia elata | 4.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.75 |
| Juven | Juvenile tuber | 4.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.63 | |
| Mother_Juven | Mother tuber of Juvenile | 2.22 |