Detail information of GWHGAAEX004518/evm.TU.scaffold_15.137
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672166153|ref|XP_008802999.1| | 8.93E-42 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Phoenix dactylifera] |
| Swissprot | tr|O04682|PTI6_SOLLC | 8.00E-29 | Pathogenesis-related genes transcriptional activator PTI6 |
| trEMBL | tr|A0A067D1F5|A0A067D1F5_CITSI | 6.00E-37 | Uncharacterized protein {ECO:0000313|EMBL:KDO36598.1} |
| TAIR | AT4G27950 | 1.00E-27 | cytokinin response factor 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 2625938 | 2626594 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004518
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 77 | 127 | 4.30E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13434 | PTI6 | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.220 |
| SRR2545915 | Juvenile tuber | 1.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.740 |
| SRR5643514 | five period of Gastrodia elata | 2.670 | |
| SRR5643515 | five period of Gastrodia elata | 4.350 | |
| SRR5643524 | five period of Gastrodia elata | 2.640 | |
| SRR5643525 | five period of Gastrodia elata | 5.170 | |
| SRR5643528 | five period of Gastrodia elata | 9.810 | |
| SRR5643658 | five period of Gastrodia elata | 3.210 | |
| SRR5643659 | five period of Gastrodia elata | 14.110 | |
| SRR5643660 | five period of Gastrodia elata | 15.920 | |
| SRR5643661 | five period of Gastrodia elata | 16.710 | |
| SRR5643662 | five period of Gastrodia elata | 20.280 | |
| SRR5643663 | five period of Gastrodia elata | 24.220 | |
| SRR5643664 | five period of Gastrodia elata | 15.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.45 |
| Juven | Juvenile tuber | 4.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.60 | |
| Mother_Juven | Mother tuber of Juvenile | 4.75 |