Detail information of GWHGAAEX004519/evm.TU.scaffold_15.138
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|557694902|ref|YP_008797956.1| | 1.00E-23 | ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum] |
| KOG | KOG0417 | 3.00E-102 | Ubiquitin-protein ligase |
| nr | gi|474386422|gb|EMS65000.1| | 6.38E-103 | Ubiquitin-conjugating enzyme E2-17 kDa [Triticum urartu] |
| Swissprot | tr|P35131|UBC8_ARATH | 9.00E-103 | Ubiquitin-conjugating enzyme E2 8 |
| trEMBL | tr|M8AJ58|M8AJ58_TRIUA | 2.00E-103 | Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_27139-P1} |
| TAIR | AT5G41700 | 3.00E-102 | ubiquitin conjugating enzyme 8 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 2627125 | 2632135 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004519
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00179.25 | UQ_con | 17 | 153 | 1.40E-53 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06689 | UBE2D, UBC4, UBC5 | Protein processing in endoplasmic reticulum | map04141 |
| Ubiquitin mediated proteolysis | map04120 | ||
| MAPK signaling pathway - fly | map04013 | ||
| Toll and Imd signaling pathway | map04624 |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 699.680 |
| SRR2545915 | Juvenile tuber | 414.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 332.950 |
| SRR5643514 | five period of Gastrodia elata | 294.690 | |
| SRR5643515 | five period of Gastrodia elata | 290.330 | |
| SRR5643524 | five period of Gastrodia elata | 296.530 | |
| SRR5643525 | five period of Gastrodia elata | 574.650 | |
| SRR5643528 | five period of Gastrodia elata | 472.040 | |
| SRR5643658 | five period of Gastrodia elata | 591.940 | |
| SRR5643659 | five period of Gastrodia elata | 425.430 | |
| SRR5643660 | five period of Gastrodia elata | 586.920 | |
| SRR5643661 | five period of Gastrodia elata | 439.330 | |
| SRR5643662 | five period of Gastrodia elata | 579.260 | |
| SRR5643663 | five period of Gastrodia elata | 511.160 | |
| SRR5643664 | five period of Gastrodia elata | 824.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 342.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 418.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 298.680 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 368.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 329.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 360.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 320.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 291.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 234.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 287.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 351.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 351.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 781.72 |
| Juven | Juvenile tuber | 473.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 330.06 | |
| Mother_Juven | Mother tuber of Juvenile | 320.40 |