Detail information of GWHGAAEX004523/evm.TU.scaffold_15.142


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|389860449|ref|YP_006362688.1|4.00E-10GTPase or GTP-binding protein [Thermogladius cellulolyticus 1633]
KOGKOG27508.00E-120Uncharacterized conserved protein similar to ATP/GTP-binding protein
nrgi|743769760|ref|XP_010915171.1|5.64E-161PREDICTED: LOW QUALITY PROTEIN: polynucleotide 5'-hydroxyl-kinase NOL9-like [Elaeis guineensis]
Swissprottr|Q8VYP6|NOL9_ARATH3.00E-122Polynucleotide 5'-hydroxyl-kinase NOL9
trEMBLtr|I1NKW9|I1NKW9_ORYGL2.00E-149Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA01G0050900.1}
TAIRAT5G110108.00E-120Pre-mRNA cleavage complex II protein family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001927460612783522+
Transcript Sequence

Network for GWHGAAEX004523

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16575.4CLP1_P382402.60E-37
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.840
SRR2545915Juvenile tuber44.840
SRP108465SRR5643513five period of Gastrodia elata28.290
SRR5643514five period of Gastrodia elata32.360
SRR5643515five period of Gastrodia elata22.320
SRR5643524five period of Gastrodia elata32.500
SRR5643525five period of Gastrodia elata29.820
SRR5643528five period of Gastrodia elata35.740
SRR5643658five period of Gastrodia elata30.730
SRR5643659five period of Gastrodia elata27.810
SRR5643660five period of Gastrodia elata25.520
SRR5643661five period of Gastrodia elata26.130
SRR5643662five period of Gastrodia elata21.020
SRR5643663five period of Gastrodia elata27.320
SRR5643664five period of Gastrodia elata19.140
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_131.980
SRR6049655Rhizomagastrodiae_C368-T10_good_141.210
SRR6049656Rhizomagastrodiae_C368-T07_good_128.900
SRR6049657Rhizomagastrodiae_C368-T07_good_124.220
SRR6049658Rhizomagastrodiae_C368-T04_good_125.750
SRR6049659Rhizomagastrodiae_C368-T04_good_123.810
SRR6049660Rhizomagastrodiae_C368-T01_good_123.950
SRR6049661Rhizomagastrodiae_C368-T04_good_121.710
SRR6049662Rhizomagastrodiae_C368-T01_good_131.230
SRR6049663Rhizomagastrodiae_C368-T01_good_131.130
SRR6049664Rhizomagastrodiae_C368-T10_good_141.820
SRR6049665Rhizomagastrodiae_C368-T10_good_141.820
SRP279888GastroGastrodia elata tuber 21.95
JuvenJuvenile tuber22.29
Mother_GastroMother tuber of Gastrodia elata 31.90
Mother_JuvenMother tuber of Juvenile 29.94