Detail information of GWHGAAEX004538/evm.TU.scaffold_15.166
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|294012309|ref|YP_003545769.1| | 2.00E-17 | copper resistance protein CopA [Sphingobium japonicum UT26S] |
| KOG | KOG1263 | 0 | Multicopper oxidases |
| nr | gi|695047778|ref|XP_009411781.1| | 0 | PREDICTED: L-ascorbate oxidase homolog [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q00624|ASOL_BRANA | 0 | L-ascorbate oxidase homolog (Precursor) |
| trEMBL | tr|F2EF72|F2EF72_HORVD | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_68237.1} |
| TAIR | AT3G13400 | 0 | SKU5 similar 13 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 3290581 | 3292454 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004538
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07732.14 | Cu-oxidase_3 | 39 | 141 | 2.80E-39 |
| PF00394.21 | Cu-oxidase | 157 | 288 | 1.60E-35 |
| PF07731.13 | Cu-oxidase_2 | 381 | 509 | 1.00E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00423 | E1.10.3.3 | Metabolic pathways | map01100 |
| Ascorbate and aldarate metabolism | map00053 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005507 | Molecular Function | copper ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.080 |
| SRR5643514 | five period of Gastrodia elata | 0.160 | |
| SRR5643515 | five period of Gastrodia elata | 0.200 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.160 | |
| SRR5643528 | five period of Gastrodia elata | 0.170 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.730 | |
| SRR5643660 | five period of Gastrodia elata | 0.110 | |
| SRR5643661 | five period of Gastrodia elata | 0.580 | |
| SRR5643662 | five period of Gastrodia elata | 0.720 | |
| SRR5643663 | five period of Gastrodia elata | 0.350 | |
| SRR5643664 | five period of Gastrodia elata | 1.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.12 |
| Juven | Juvenile tuber | 0.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.13 | |
| Mother_Juven | Mother tuber of Juvenile | 0.16 |