Gene detail

Detail information of GWHGAAEX004542/evm.TU.scaffold_15.171

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|146298365\|ref\|YP_001192956.1\|	4.00E-39	two component regulator [Flavobacterium johnsoniae UW101]
nr	gi\|743789152\|ref\|XP_010922852.1\|	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Elaeis guineensis]
Swissprot	tr\|Q9LT96\|Y5977_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At5g49770 (Precursor)
trEMBL	tr\|A0A0A0LA06\|A0A0A0LA06_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN58673.1}
TAIR	AT1G79620	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	3375073	3382150	+

Transcript Sequence
>GWHTAAEX004542 CATCATTGGAACGGGCAAGACGCGACAAATTGGTGTCATTTTCAATGAATCGTTCAAAACCAATAGTTTTGAGAAGAGGAAACAGGAAGTGTTACTTCTTTTCTTAGAAAAAAAGAGAGTTTCGCTTGGAAGGTAAGGGAATGAGCAGACTTTTGGGAAGCTCAAATTTTCTCTGCTAACCTCCACCCTCTTTGTTTAACCGATCAACCATGGCTAAGCTCCAGCAGAACTTCAGCATATTTTCCGATTCAAATAACTCATATTGAGCGAAGAATTCGGCTCCAGGAAGGGATGAAGGCGTTTTCAAAAGTCCTCCTTTTGCTCTTTCTGATTGAAGGACTCCTCCATCTTGGCCATGGAGATACCGATGCTACTGATGCTGCGGCCCTCCGATCCATGGCAGATAACTGGCAGAACTCACCGCCCAGCTGGGGGAGGAGTGGTGATCCTTGCAATGAATGGGACGGAGTTACGTGTGCAAACTCAAGAGTTACTGCGCTAAGATTGTCAACTATGGGACTCAAAGGTACATTAAGCAGCGATGTATCACAGCTTTCAGAGCTGCAATCATTGGATCTATCCTACAATATTAATCTTGGTGGTCCTTTGCCGTCTGGCTTAGGAAATCTGAAGAAGATTACCACCCTAATATTGGCAGGCTGCAGCTTTTCTGGCTTAATTCCACAGGAGCTTGGTAGCTTGATAAATCTCTCGTTCTTAGCTCTGAATACAAACCGTTTTACTGGAAGAATACCGCCTTCCATTGGCCTGCTCTCCAATTTATACTGGCTGGACCTTGCAGAAAATCAGCTTACAGGGCCTCTTCCTGTCTCCTCAGGCACCTCCCCAGGCTTGGATCTTCTCATTAACACTAAGCATCTCCACTTTAACAAAAACCAGTTATCAGGCGAGATACCGAACAATCTCTTCAGTGCCAAAATGACGTTAATACATATACTCTTTGATTCCAATAAATTTACCGGCCAGATCCCGGGATCAGTAGGGCTTGTAACGTCGCTCGAGGTTCTACGACTTGATCTCAATTCTCTAAGTGGCCGAGTTCCTTCCACCCTAAACAATCTTATATCAATCAATGAGCTGAACTTGGCCAACAATCAGCTTAGTGGACCGCTGCCTAATTTGACTGGGTTGAACTTTCTCAACTATTTGGATTTGAGCAACAACACTTTTGACTCAAGTGAAGCCCCAGCTTGGCTCTCCACATTGCAATCATTGACTGCTTTGTTGATAGAATCTGGAGGGCTATATGGCAATTTACCATCAAAAGTGTTCAGCATTCCTCAGATACAGCAAGTATTATTAAGTAACAACGCATTCAATGGAACTCTTGATTTGGGCAATGCTAGCTCTGAGCTACAGATTGTGGATTTCAAAAACAATGCCATCTCTGCATACAAATCTTCCACCACTTACAATGAAACCTTAATACTCATTGGAAATCCAGTGTGCACTGCTCAGCTGGCAAATTCAATCTTTTGCAGCCAGCAACAGCAAATGCAAACTCCTTATTCTACTAGCTTAGTACAGTGCACTTCTACTTCATGCTCCATTGATCAGAGTGTAAATCCACAGAGCTGCGCTTGTGCTTATCCATATCAGGGGCTGTTAGTATTCAGAGCACCCTTCTTTCGAGATATATCAAACAGCACACGGTTTCGAGAACTAGAAATGACACTTTGGAGCAAGCTGGGCCTCACACCAGGCTCAGTTTACCTATCAAATCTCAACTACAATGATAACAACTATCTGGAAATGCAACTGAAGCTCTTTCCATCGAACGAAATGTACTTCACTCGGTCAGAAATTCTGAAACTTGGGTTTTATCTGAGCAACCAAACTTATAAACCTCCTGCTGAGTTTGGACCATACTATTTCATTGGCTCTCCATATCCTTTTTCAGATACCAATGGTGGGAAAAGCTCAATGAGCGTGGGTGTTAAAGCCGGAATTGCAGTGGGTTGCATTGTTCTTCTTCTTTTGCTAGCGGTTGTTGCAATTTACGCCATTCGGCAGAAGAAGAGGGCTGAGAGAGCTGTTGAACAGTCCAAGCCTTTTGCCTCATGGGTATCAATGACTAAAGATTCTGCTGGTGTACCACAACTAAAAGGAGCAAGATGGTTTTCCTTCGACGAACTCAAAAGGAGCACAAATAACTTTTCAGAAACCAATGAAATTGGATCAGGAGGCTATGGCAAGGTGTACAAAGGCATGCTATCAAGTGGGGAGCTTGTTGCAATTAAAAAAGCTCAGCAAGGATCCATGCAGGGTGGCCTTGAGTTCAAGACCGAAATCGAGCTTCTTTCAAGGGTTCACCACAAAAATCTTGTAGGCCTTGTCGGCTTTTGTTTTGAACAAGGAGAGCAAATGTTGGTGTATGAGTACATTCCCAATGGAACACTAAGGGAGGGCCTGAGTGGGAGAAGTGGCATACAATTGGACTGGCCCAGGAGACTCAGGATCGCTCTTGGGTCTGCTCGAGGATTGGCTTATCTTCATGAACTAGCAAACCCGCCAATAATTCACAGAGATATCAAGTCTACCAATATTCTTTTAGATGAAACATTAACAGCAAAAGTTGCAGATTTTGGCCTCTCAAAGCTTGTTTCAGACAGCGAGAAGAGTCATGTTTCCACCCAAGTTAAGGGAACACTGGGTTATTTAGATCCAGAATACTACATGACTCAGCAGCTGACAGAGAAGAGTGATGTCTACAGCTTTGGAGTTGTAATGTTGGAAATGATTACTGCTAGGCAACCAATAGAGAAGGGCAGGTATATTGTAAGGGAAGTGAGAACCTGTTTAGATGAGATGGATGAAGAATATTATGGGTTGAAGAACTTAATGGACCCATCAATTACAAACAGTACAAATCTGATAGGATTCTGGAGGTTCGTTGAGCTTTCAATGAAGTGTGTCAATGAAACAGCAGCGCATCGGCCAACTATGAGCGAAGTAGTGAAAGTAATAGAGACAATGCTGCAGAATGCGGGGCTGAACACTGGCACAAATTCTTCATCTACATCTGCGACAGACTTTGGGAACACAAAGGGCGCTTATCATCCATACGACGATTCGCTGCCGAAAAAGGACTTAAGTGGCAGTGTCTTTCAATACAGTGGAGGTTACTCCTTTAATCGGATTGTGGAGCCAAAATAGTGGGCTTGTCCTTTTGTATTTAATTTCTTTCCATGGTTATTTGTATTTTTAGTACATATTCTAGGATTCTTAAAGAAAATTAAAGTGTAGGCTGTCAGTTGTATTTTTATAAGGTCAAAAACTTAACCATACCATTCCACACAGTTTGATTCATATGAGATGCATAAGAATTTGTTTGAGGCATTATATGTTGTCTTTGGTTCTACAGTGGCTTGCAAGCGTCTTGCTTTATTAAAGCTTCCATTACCAAGAAATCATTTTAATGACTTACCATACAGTAGCTGCATCAGTAAGGATGTTGCTTTTTGAATTGAAGGTCTTAAAGTGGATATCTTAACTTTAGCTCAACATGCAAGATTTTATCAGACTGTACATAGGCTATGGAGAACAGCTAATTGGAGGACAATGCATGGTTAAGATTTGCATCAGATCGCATAAGATTGAACTAAAGGTTATGACCTTTTTTGTCACTTTTAACAGGAGCGGGGTGAATTGGGCTGTAAATCATAGAAAACTAGATTGATGAGAGATTTACTATTTAGTGAGCTTAAGAAACTTTGAGAGCAAACATAACAAACACAAATGAAATAGTATTGTAGTAAAATATATGCTTGCTTTTTAATCAAATGTTTGTTGCTCAAGATTTAAAAACTATATTAATGAGAAACAATATATAGCAGTGTATTGTGTTGATTGTGAGGTGGAATGGGATGATCATGGATCAATTGGAGGTGAACCAAGTTTACCTATACTGCTCACCAAGCGCTGAGGTACTGCGGCGCGCTGCGGCGGATTTAACTTAATTTCATCAAATTTTTATGCTTCATTAAATTATTATGTCGCTGCGGCGCGCCATAGCGCTCTATGGCGCGGTACGGCGGACCGAATTTCGAAACTTCGGGCGCTGCGGCGCCTGACGGTGATTTCACCTGTGCGAAAACCGTAACGGGTCTTATTTCGCACTCAAATACTCCTAATTTTGGGCACCTTACGTGCGGTGCCATATATTGATGGAAAGGTATTTCCGAGACCTTTCCATTGATACCAA

Network for GWHGAAEX004542

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.11	LRRNT_2	27	62	9.50E-05
PF07714.16	Pkinase_Tyr	632	897	9.40E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VIII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.540
SRP064423	SRR2545915	Juvenile tuber	17.630
SRP108465	SRR5643513	five period of Gastrodia elata	30.210
	SRR5643514	five period of Gastrodia elata	21.140
	SRR5643515	five period of Gastrodia elata	27.720
	SRR5643524	five period of Gastrodia elata	22.520
	SRR5643525	five period of Gastrodia elata	20.840
	SRR5643528	five period of Gastrodia elata	18.130
	SRR5643658	five period of Gastrodia elata	13.780
	SRR5643659	five period of Gastrodia elata	15.540
	SRR5643660	five period of Gastrodia elata	12.930
	SRR5643661	five period of Gastrodia elata	20.030
	SRR5643662	five period of Gastrodia elata	14.270
	SRR5643663	five period of Gastrodia elata	27.600
	SRR5643664	five period of Gastrodia elata	21.950
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	55.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	57.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	57.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	57.260
SRP279888	Gastro	Gastrodia elata tuber	10.34
	Juven	Juvenile tuber	25.42
	Mother_Gastro	Mother tuber of Gastrodia elata	116.68
	Mother_Juven	Mother tuber of Juvenile	66.32