Gene detail

Detail information of GWHGAAEX004547/evm.TU.scaffold_15.178

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2151	Predicted transcriptional regulator
nr	gi\|672139206\|ref\|XP_008793379.1\|	PREDICTED: probable NOT transcription complex subunit VIP2 [Phoenix dactylifera]
Swissprot	tr\|Q52JK6\|VIP2_NICBE	Probable NOT transcription complex subunit VIP2 (Fragment)
trEMBL	tr\|M0RFI0\|M0RFI0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P05030_001}
TAIR	AT5G59710	VIRE2 interacting protein 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	3588799	3630534	+

Transcript Sequence
>GWHTAAEX004547 CTTTTGTAAGTACATTTGTCAAGTCGAAATACACAATCTGTCAAATTTAGTAAAATTTTAAATTCAAAGGATAGCAAATTTCAACTCAAAATCATGGAAAAATTTTCAGTGATCCCATTTGATCAACTGCTCATAATATGATTAAGCCCTAAAACATCCGGCGATGTGTCTTCGAAAAAACTGTTCGATTCCTCGACGTTCCTCTCCGCAAATATCGAACCGAGCTTCGATCTCGAACTCTTAAACCCAGTGGCAACGATCCATTTGCTCTTACAGTCTTTCTTGTCCGGCGATATCGCCTTCAGCTTTCTCTCGTCGACTAAATCTCAAAGCAAACACACGGGCAAACTTCCAAACCTTCCGATCCGATTAAGATGGAAGTTGAGGTTCATACTTTAATTGAATGTGATAATGCGGCATAACTATTAAAGATTGCAGTGACCTGCTGGACTGGAGTACAATGTCCGGGATACTTAATCCGAACTTAGGTGGCTCAAATTCAAGTCTTACTGATGCTACTGGAAGACCTATAGCATCTTCTTTTTCTGCTCAATCAGTAAACGCTCCTAGTTTTCATCACTCTGGAGGCATGCAAGGATTACATAACATGCATGGAAACTTTGTTTCAAGCATAGCTGGTTCTTTGGCATCAAGGAATTCTGCGATGACTGCTGTTCCTTCTAGCGGTCTCCAACAACCAACTAGCATCACTTCCGGAAGATATTCATCAAATAATCTTCCACTGGCAATGTCTCAGATCTCACATGGACACTCAGGGATTACTGAGAGAGGTGGCATCAATGTTGCAGGCAATATTGGTTTCAGTAGCAATATAAATGGAGTTGGTGGTTCCATACCTGGGTTTTCTTCTGGAGCTGCTTCTGCTGCCAACCACAATGCTATTCCTGGTATGGGAGTCAATCCAATTTTGGGAAACCTAGGTCCTCGAATATCAAATACAGCTGGAAATATAGCTGCTGGAGGTAACATTGGAAGGAGCATAAACTCTGGCGGGCCAACTATTTCAAGTCTTGCATCAAGAGCAACTTTAGCTGCTAACAGCGGATCTGGGGCTCTTAATTTACAAGGTCCTAATAGACTGATGGGTAGTATGCTTCAGCAAGCTCCTCAGATGATGGGGATGCTTAGGAATTCCTATAACATGTCTGGTGGACCAATGCCTCAGAGGCAACTACAAGGAGCTAGCAGTTTGCTAAGTTCTATGGGATTGCTGAATGATGTGAACTCAAATGATGGTTCTCCTTTTGACATAAATGATTTTCCTCAGTTATCTGGGCGCCCTAATTCTGCTGGAGGGCCACAGGGTTCTTTGCGGAAACAAGGTCTTGGTGTAAGCTCGATTGTCCAGCAAAATCAGGAATTTAGTATCCAAAATGAAGATTTTCCTGCATTGCCTGGTTATAAAGGTGGAAGTTCAGAATTTGCATTGGATTTGCATCAGAAGGAACAGTCTCATGAAAATGTTTCTGTCTTGCAGTCACAAAACTTTGCTATGGGGGGTTCTACTGGATTCACACATGGTGGGTCTTATTCATCAAATCGTCAGCAACATCAGCAGCTTGCAACACCTGTCAGTACTGCTGGTGGAGTCTCCTTTGCAACTGGAAACAATCAAGACCTTCTTCATTTATATGGTTCTGATATGTTTCCATCTTCACATGGCTATCATGGTCAGATTCAGAGTAATGGACCTCCTAGCATTGGATTAAGACCATTAAATTCTCAAAATCCAGCTTCAGCCATTGGACCCTATGATCAACTTATTCAACAATATCAACATCCCCATAACCAATCTCAACTTCGCCTGCAACAAATGTCAGCTATTAACCAGTCATATAGAGATCACAGTCTGAAGTCCTTGCAAGGGACACATATATCTGAGAGGTTTGGCTTGTTGGGCTTGTTGGGTGTAATCAGAGGGAATGACCCTAATCTCACATCTCTTGCTATGGGGATGGATTTGACAACTCTGGGATTGAATTTGTTAAGTTCACCAGGTGATTTGCACAAGAAATTTAGCTCCCCATGGTCGGATGAGCCAGCCAAAGGAGATTCTGAGTTTTCTATTCCATCTTGTTATTACTCTAAACCGCCTCCTCCATTAAAGCAGGGACATTTTGCAAAGTTTCATATAGGGACATTATTCTACATTTTTTACAGTATGCCAAAGGATGAAGCTCAGCTATTTTCTGCTTATGAACTATATTCAAGGGGATGGTTTTACCACAGAGAGCTTCAGTTATGGTTATTGAGAATTGGAGAGCCTCTTGTAAAGACTCAATCATATGAAAGGGGGTCATACCATTACTTTGATCCGAGTACATGGCAAACTATACGTAAGGACAATTTTGTTCTTACCTATGAGGCGGTAGAGAAGAAACCAATCCTGCCTCAGAATTGAACGTTTGTTTTTGTCGTTAACTTTTTAGCATATTTTGTCTTCTATCAGATAATTTGGTCAGAGGTTACTGGGTATATGGTGCAGTTGCTTCTTTCAATTGTGAGATTTGTTCAAATTGATGGCTGATACTTCGAAGTTAAGCATCGATTGCTTCACTGGTTGATTTCTATATTTTCCATGACAGTGCGACCTTCAGTGATGCCATGCCCGGGTCATTCATATTTACGTGGAAGGAGCAAGTGCCATCTCATCTATAATTAACCTTTGGAAGGTGTTCAGGCCTTGTTGTTTTCATACTGAGAATTAATTTTCAGTGCGCTGATGTCTTGGTATTTCAACTAAAGTGACACGCCTACGTACTTTTTTTTTGTTGGCTTTTTTATAAATAGTTCTGTTTTTCCAAAAAAATAAAATAAAAAAAAAACTCTTTCACTGCTTCAGTAAATGGATCGATTTCCACTGCAAGTATATCATCCGATTATGTCTAGAAAGAAATAACTCTGATTTGTGATATCACTTCACAAAGCCTAACCATATGCTCTTTGGATCATTGTCAGTCCTCAGTGAAGTATCATATGAATAAGATTTGATTCTTATTAGTGTTTCCGTAGTGATTGGGAGCCACTAGTTTCCAATCCATGCTTAGATTAAAGGCATTCTATTTGACACTCGTTACTGTTGTATCATGGTCGTCATCATATCATCATCATCCCTTTATCATCATCTTGGGTCTCATGACATCCGATGGAGCGTTGATCTTGATCATGATCGGCATGTGGGAAAGAGCTATAAATCTCCAGCTAGTTTTCTTCAGAACTCAGATTTTCTTGCCATTCCCAATTTGTTAAGAGCAAAAAGGTCCACAATTTTATTGCCTTTGTAGTGAAGTCTTACATTTGAATTACATATCATCTATATTTATTAATGGGAACACTTATGCAGGGCTTTTACAACGACACCTATTTTGTTTTCTTTAATGATGAGCAAACCTCAAATGAGCTAAGTTGAATTAATTTCTGCCTTTAATGGTGTGAAGCAGCCAAATTA

Network for GWHGAAEX004547

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04153.17	NOT2_3_5	524	643	5.20E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12605	CNOT2, NOT2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.230
SRP064423	SRR2545915	Juvenile tuber	35.920
SRP108465	SRR5643513	five period of Gastrodia elata	20.160
	SRR5643514	five period of Gastrodia elata	20.130
	SRR5643515	five period of Gastrodia elata	19.770
	SRR5643524	five period of Gastrodia elata	20.410
	SRR5643525	five period of Gastrodia elata	22.340
	SRR5643528	five period of Gastrodia elata	22.860
	SRR5643658	five period of Gastrodia elata	21.600
	SRR5643659	five period of Gastrodia elata	24.350
	SRR5643660	five period of Gastrodia elata	24.560
	SRR5643661	five period of Gastrodia elata	23.470
	SRR5643662	five period of Gastrodia elata	25.830
	SRR5643663	five period of Gastrodia elata	25.270
	SRR5643664	five period of Gastrodia elata	26.850
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.380
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.240
SRP279888	Gastro	Gastrodia elata tuber	25.95
	Juven	Juvenile tuber	18.47
	Mother_Gastro	Mother tuber of Gastrodia elata	23.04
	Mother_Juven	Mother tuber of Juvenile	21.96