Detail information of GWHGAAEX004548/evm.TU.scaffold_15.179
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|22298552|ref|NP_681799.1| | 3.00E-42 | ferredoxin I [Thermosynechococcus elongatus BP-1] |
| nr | gi|567906839|ref|XP_006445733.1| | 7.52E-54 | hypothetical protein CICLE_v10017081mg [Citrus clementina] |
| Swissprot | tr|P27788|FER3_MAIZE | 1.00E-53 | Ferredoxin-3, chloroplastic (Precursor) |
| trEMBL | tr|V4TF04|V4TF04_9ROSI | 3.00E-54 | Uncharacterized protein {ECO:0000313|EMBL:ESR58973.1} |
| TAIR | AT2G27510 | 5.00E-47 | ferredoxin 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 3692700 | 3693705 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004548
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00111.26 | Fer2 | 68 | 142 | 6.90E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02639 | petF | Photosynthesis | map00195 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0022900 | Biological Process | electron transport chain |
| GO:0009055 | Molecular Function | electron carrier activity |
| GO:0051537 | Molecular Function | 2 iron, 2 sulfur cluster binding |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.620 |
| SRR2545915 | Juvenile tuber | 32.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 68.360 |
| SRR5643514 | five period of Gastrodia elata | 69.980 | |
| SRR5643515 | five period of Gastrodia elata | 74.010 | |
| SRR5643524 | five period of Gastrodia elata | 71.050 | |
| SRR5643525 | five period of Gastrodia elata | 77.230 | |
| SRR5643528 | five period of Gastrodia elata | 95.510 | |
| SRR5643658 | five period of Gastrodia elata | 75.760 | |
| SRR5643659 | five period of Gastrodia elata | 64.340 | |
| SRR5643660 | five period of Gastrodia elata | 80.360 | |
| SRR5643661 | five period of Gastrodia elata | 66.330 | |
| SRR5643662 | five period of Gastrodia elata | 87.770 | |
| SRR5643663 | five period of Gastrodia elata | 75.660 | |
| SRR5643664 | five period of Gastrodia elata | 81.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 65.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 52.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 79.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 58.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 50.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 52.850 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 62.150 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 68.230 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 89.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 71.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 77.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 77.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 66.52 |
| Juven | Juvenile tuber | 34.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 38.61 | |
| Mother_Juven | Mother tuber of Juvenile | 29.88 |