Gene detail

Detail information of GWHGAAEX004550/evm.TU.scaffold_15.181

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|514807259\|ref\|XP_004978486.1\|	7.30E-110	PREDICTED: zinc finger CCCH domain-containing protein 23-like [Setaria italica]
Swissprot	tr\|Q9SV09\|C3H46_ARATH	3.00E-108	Zinc finger CCCH domain-containing protein 46
trEMBL	tr\|M0TNZ0\|M0TNZ0_MUSAM	1.00E-125	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P09370_001}
TAIR	AT3G51950	1.00E-107	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	3740922	3745522	-

Transcript Sequence
>GWHTAAEX004550 TATTTATGATATTTTTCTTTGACATATGATTCCAATTTTGCTTTCACAAACCCCCTTTTCTCATTTTTCTTTTTTTCGCTTTCGTATTTAAGATAGCAACACCTTAATTTTATCCAATAATGATCAGTGAAAATCAGAGTGACGCCAAATTGATCAATTCGGATCTGAAAATGACTGCACGCATAAAAAAAACAATAAAAGAAAATTATCTTGTCTTTCTGTAGGAAGCCCGCCACAGCATAAACAGTAATTACAGCAACAAAACAGTAATGGCAATAATAGGGGAACAGTTGGTGAGAGAAGAGAGAGATGGCGCATGGGCCATGGCCCGAAAAAAGAGAAATTTGCCTAACCCAGAGATCCACAGAAAGCCTTTTGACCACTCGCTTAGAATTGCAATGCTTCTTCGCATTCACGCAGCACAATCAAGAAGCACAACTACAGAAAGCTGGCTCTTTGAATGAACTGCAACCCCTAATAAAATCACCACGAAAGCTGCCTTTTTTTCACTTGCTCTGTTCAATTAACTCCTCTTGCCTTTCACTGCTTTTTAAAAAAAGGAACAGGAAGCGAGAAAGGGAGCGGAAGATAAACATTTTGCCGGCGGCAGCGCCATGGACGCGTACGAAGCTACTAGGATCGTCTTCTCTCGAATTCAGAAGCTCGACCATGAAAACGCTGCTAAGATCATGGGGCTTCTCCTCATCCAGGACCACGGGGAAAAAGAAATGATCCGCCTTGCCTTCGGCCCTGAAGCCCTTCTTCATTCCCTCGTTCTCAGGTTCCGAAAAGAGCTGGGCCTCCTTCCTTCTTCCTCGCCGGCCACTCCTTCGACCAAGGGGCAAAACTCTGCTTCTTTCCTTCCTTTCCTTTTCAACGAAGGGGGAAACGCTGCTTTGAGGACGAAAAGCAGCGAGCTTTATTATCCTGATGCGTCCGGCGCGTTTGGGTGGAGGCCCTGCCTTTACTTTGCGAGAGGATTCTGCAAGAACGGCAACACTTGCCGCTTTCTTCACGACGATGCTGCTGCTGAGTACAAGAGCGCGAAGATTCCTTACTCTCCGATATCTGTTTCTGCTAAATATTGGAACTTTCTGCTCCAGAGCCAAACGGATGGACAAAGAGCGGCGGCTGCGTTGATGCTTAGCGGAGACGATGAGATGCCTAAGTTTATGGGGCGAGCAAGATCTGATTTCTTGAGAATTTCAAACGCGGGGTCAAGGCAGATCTATCTCACCTTCCCGGCGGATAGCACTTTCAGGGAAGAAGACGTTTCGAATTACTTCAGCATCTATGGGCCGGTGCAAGATGTGAGGATTCCGTATCAGCAGAAGAGAATGTTTGGATTCGTGACCTTTCTCTATCCAGAGACTGTGAAGCTGATTCTTGCCAAAGGCAACCCCCATTTCGTCTGCGACGCCCGAGTTCTCGTCAAGCCTTACAAAGAGAAGGGCAAAGTTCCTGAAAAGAAGCAGCAATCAGAAAGACTGGATTTCCCAAGCTCTTGGAGTTCACCAGTCATCGATTCCCCGTTAGATATTGGAGGAAAATTTATCTATAGCAATTTATGCAATGGCGGCATCGCCGCCCAGGAAAATTTGCTTCTGAGACGAAGGCTGGAGGAGCAGCAACAGGCTGAGCTCTTGCAGCAGGCGATTGAGCAGCAAAGCCGACGGTTTAAGCTTATGGACCTGAAGCCTCCCAATTTTTCTGCCACAGTTTCTGCTAATGTTTCCCATTCAAACACTTTAACAGCTTCAAATTCATCTTTTTGCAATGGAAACAGTAGCTCAGCGGGAGCACTGGAAGAAGAGCTGAGCAGCAGCACTGGATGCAGCACAGAAATACATCAACTGAATAGTAATGTCTGTAATAGAGAGGATTCTGAAGAAGAGCCATCAAAGGAAGATGAGGATTTCCTATTTTGCAGCACAGAGCACAACTTGCCTGACAGCCCCTTCGCCTCTCCTACCAAAGCCTCTTCTTTCCTCCCTTCGGACATCTCTTTCTCTGCGTTTTCTCCGCTCAGCTCCTGCTTCTTTCAAATGCCCGCCAGGTTCTCTTCCGGGCATGGAGCTGTTGGATTGTGAGGAAGAAAGTCCCTAAAAAGAAACAAAAAGGATACTTTTGGAAAACAACTCAAAGAAAATGACACAGCACGACAGCCTCTTTTTGTTATTCGGTTTCTAACCTTTTTTATTTTCTTTTTTTTCACGTCAGAAGCCAAAAAGGAAGTAAAATATCAGATCATGGCCGTTCATCTCATCATGAGCCCATAAATCCACCGTTGCTTTACCTTTTTCCTTCTTTATACCCTGTTTTATTGTTGGATGCGACAAAAGAAAATATGACAGCAAATAATTGCCTTTTTTATTGTATTATTATCTCATTATAATGATAAGNGATTAA

Network for GWHGAAEX004550

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.23	zf-CCCH	114	135	1.20E-05
PF00076.21	RRM_1	215	259	2.00E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	82.900
SRP064423	SRR2545915	Juvenile tuber	48.200
SRP108465	SRR5643513	five period of Gastrodia elata	80.980
	SRR5643514	five period of Gastrodia elata	60.670
	SRR5643515	five period of Gastrodia elata	48.460
	SRR5643524	five period of Gastrodia elata	53.030
	SRR5643525	five period of Gastrodia elata	50.710
	SRR5643528	five period of Gastrodia elata	39.570
	SRR5643658	five period of Gastrodia elata	58.020
	SRR5643659	five period of Gastrodia elata	91.960
	SRR5643660	five period of Gastrodia elata	103.170
	SRR5643661	five period of Gastrodia elata	86.460
	SRR5643662	five period of Gastrodia elata	95.600
	SRR5643663	five period of Gastrodia elata	112.090
	SRR5643664	five period of Gastrodia elata	175.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	159.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	118.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	154.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	154.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	239.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	254.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	182.740
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	180.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	107.800
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	164.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	135.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	135.790
SRP279888	Gastro	Gastrodia elata tuber	109.81
	Juven	Juvenile tuber	168.23
	Mother_Gastro	Mother tuber of Gastrodia elata	71.14
	Mother_Juven	Mother tuber of Juvenile	87.51