Detail information of GWHGAAEX004553/evm.TU.scaffold_15.188
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672137594|ref|XP_008792525.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9LFQ4|PP383_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g15010, mitochondrial (Precursor) |
| trEMBL | tr|M0U6Q7|M0U6Q7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP05960_001} |
| TAIR | AT5G15010 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 3827599 | 3829083 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004553
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 125 | 148 | 0.096 |
| PF13041.5 | PPR_2 | 262 | 310 | 5.20E-11 |
| PF13041.5 | PPR_2 | 331 | 379 | 5.70E-12 |
| PF01535.19 | PPR | 402 | 431 | 0.048 |
| PF13041.5 | PPR_2 | 433 | 472 | 4.90E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.080 |
| SRR2545915 | Juvenile tuber | 1.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.430 |
| SRR5643514 | five period of Gastrodia elata | 5.760 | |
| SRR5643515 | five period of Gastrodia elata | 4.960 | |
| SRR5643524 | five period of Gastrodia elata | 5.880 | |
| SRR5643525 | five period of Gastrodia elata | 1.130 | |
| SRR5643528 | five period of Gastrodia elata | 2.130 | |
| SRR5643658 | five period of Gastrodia elata | 0.930 | |
| SRR5643659 | five period of Gastrodia elata | 3.720 | |
| SRR5643660 | five period of Gastrodia elata | 3.210 | |
| SRR5643661 | five period of Gastrodia elata | 3.770 | |
| SRR5643662 | five period of Gastrodia elata | 4.340 | |
| SRR5643663 | five period of Gastrodia elata | 2.910 | |
| SRR5643664 | five period of Gastrodia elata | 2.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.78 |
| Juven | Juvenile tuber | 3.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.78 | |
| Mother_Juven | Mother tuber of Juvenile | 1.57 |