Detail information of GWHGAAEX004559/evm.TU.scaffold_15.196
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-41 | FOG: PPR repeat |
| nr | gi|743819403|ref|XP_010931516.1| | 1.75E-83 | PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like [Elaeis guineensis] |
| Swissprot | tr|Q9SJZ3|PP169_ARATH | 5.00E-42 | Pentatricopeptide repeat-containing protein At2g22410, mitochondrial (Precursor) |
| trEMBL | tr|I1HSS4|I1HSS4_BRADI | 2.00E-72 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G53230.1} |
| trEMBL | tr|I1HSS4|I1HSS4_BRADI | 2.00E-17 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G53230.1} |
| trEMBL | tr|I1HSS4|I1HSS4_BRADI | 5.00E-13 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G53230.1} |
| TAIR | AT2G22410 | 2.00E-41 | SLOW GROWTH 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 4053861 | 4054508 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004559
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 49 | 75 | 2.10E-05 |
| PF13041.5 | PPR_2 | 106 | 142 | 5.80E-09 |
| PF01535.19 | PPR | 183 | 207 | 0.0039 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.390 |
| SRR2545915 | Juvenile tuber | 1.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.420 |
| SRR5643514 | five period of Gastrodia elata | 2.480 | |
| SRR5643515 | five period of Gastrodia elata | 5.820 | |
| SRR5643524 | five period of Gastrodia elata | 4.710 | |
| SRR5643525 | five period of Gastrodia elata | 1.020 | |
| SRR5643528 | five period of Gastrodia elata | 1.840 | |
| SRR5643658 | five period of Gastrodia elata | 1.390 | |
| SRR5643659 | five period of Gastrodia elata | 6.270 | |
| SRR5643660 | five period of Gastrodia elata | 2.930 | |
| SRR5643661 | five period of Gastrodia elata | 4.750 | |
| SRR5643662 | five period of Gastrodia elata | 6.960 | |
| SRR5643663 | five period of Gastrodia elata | 6.710 | |
| SRR5643664 | five period of Gastrodia elata | 4.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.45 |
| Juven | Juvenile tuber | 2.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.71 | |
| Mother_Juven | Mother tuber of Juvenile | 1.49 |