Gene detail

Detail information of GWHGAAEX004561/evm.TU.scaffold_15.198

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743819288\|ref\|XP_010931479.1\|	5.94E-73	PREDICTED: uncharacterized protein LOC105052385 [Elaeis guineensis]
trEMBL	tr\|A0A068V789\|A0A068V789_COFCA	9.00E-46	Coffea canephora
TAIR	AT5G18440	2.00E-42	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	4100554	4122898	+

Transcript Sequence
>GWHTAAEX004561 GATAAACTAAAAACCCTAAACCGTATTCCGACACGGGAGGTCTGCTTTAACGCAACGTGCTCTTGCTAAGATCGAATTCCTCTCATCCTTGGATCTTTACTCGCTGCTGTTATTTTCCAAATAGAGTCTCCTTTGTCACCAGAAAAATCAAAAGATGTTGCCTTTCTTCACTCCCTTTCCGAACCAAAATCAGATGCAAGGAGGCAACGAACCATCTCTCAATCAGTTTCCGAACTCGTCAGGCGCCGCCCTACCTAATCAATTTGGTTTCAATAATCCGCAATTTTTGATGCCAGCGATGGGAGGTTTTAGCAACCAGAACGCTCTTTTGAGCAATTTGCTCAATCAGCAGCATCTGATTCAAGGGTTGCAAAACAATCTGTTGGGCACAATTTTGCGTCAGGGAACTATGCCCCAGTTCAACGGGCAGCAGCAGCAGCAGCTTAATTTGCTTGGAGCTCTCCAAAACCCTAACTTTATGTCCTTACAACATGGTGGACTAGTAAGTGGGCCTACTCTGGGTCAGAACCTTAATCATATGATGGGGTTTTCAGCAAATGGATTGACATGCTCGCAAAACCCTATCTTTCCTCCTAATTCTCAGTTGGCAGCAATGAACTCCGGTAATTCCAATCCTGCTTTTCTGACCAATGGATCTACACTGGTTGGGCAGAGCTTGAGTAGTTCGGCAGGCCTTGAAACTCAGATAAACAGCCAGAATTTACAAGAACCAATCTTGCCGAGTTCAGTGAAGAATAATCAGAACAATGGGCGGCAGTGGCCTCAGATGACTCAAGGTCAAGCTCATGGAAAGAACCTCTCAAGTAATTCCTCTGAGAATGTTGTTAGCAATAACATCAAGCCAAAATTTAATGATCAAGGGAAGAGGCAACCATCACATATGAGATTCCAAAATTTTCATTCTAACAACTCAAGAAATTCCTGGCGCAAGGACATGCCGTTTCCCAGAAATGATAACAAAGGACAACACTACAACAAAGGGAAAAATAATAATTTTTCAGAGAGCAGTAATAAAAGTTTTACAGTGCGCAAGAGGCCGCATGCCATTATATATAGTGAAAGCGAAATTCAGCAGTGGCGTGAGGCGCGCAAGAAGAACTTTCCAACCAGAAATAAAAGTGAGAAGAAGCTGAGCCTAAGCAGCACAAAGAAGGATGACAGAGATTCAGATGCTGAACTACGCCGACAGCAACTCAGGCAAGTTTTAGCAAAACAGGCAGAACTTGGATTCCAAATTGCAGAAGTACCTTCAAGCCTCATTTCTGAACCTGAAGAGCAGATCCACATGAATGTGAATATGAGTGCTCAAGCTCCATTCAAACGTTTCGATAAAAAGAGAGGTAGGTTCCAGCGCAATAAAAAAAACACAAAAAGGATGAAGCCCGGGAATGAGAATGTCTCCTCTTGCGAGCCCGTTGTGAAGAAAAGGGAAACGACTCTTTTACGGAAGCTCTTAAATGCTGATATAAGGAGAGACAAAAGTCAACTTCTGCAGGCTTTCAGATTCATGGTATTGAATTCTTTCTTCAATGATGTTCCTCATAAATCCTTAGTGCTACCAATATTCAAAGTTAAAGATGAGGAGATTGATAGGGAAAAATCATGTGAGAATAAAGTAGATTCTAATAACGCTGGTTTAATGGGAAAGAATGGAAACGCTGAAGAGATTGAGAGAGATAAGTATCCAACTGTTGTTGAAGCAGAAGAGAGTGATAGTGAGGGCAAGAAATCAGAGGAAGGAGAGGTTACCGATTAGCATTACTAGCATATCTTTTTTTCTGCTCATCGTTTTCATTTGAGTTGCACTGGTTATGAAGAATATATACATTTTAATGTCTGTATCATTATTATGGCATTTTGTGCAGTTTTTTATATGCAATTTGATGGTTCATAAAAATAGAAAATGCATTTTTTATGTTGAGTAGAATGATTTTTCAGCTTGCTTTGTTTGTTGTGCATTGGAGAAGTGCTAGGGGTGGGTGTAAAATTGTAAGTGTGGAAGAAAATCATGAATATTAATGAAATCAAGTATTTAAAACTCATTTAATGCTTGGT

Network for GWHGAAEX004561

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10453.8	NUFIP1	303	338	7.40E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14404	CPSF4, YTH1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	46.710
SRP064423	SRR2545915	Juvenile tuber	59.860
SRP108465	SRR5643513	five period of Gastrodia elata	40.790
	SRR5643514	five period of Gastrodia elata	44.240
	SRR5643515	five period of Gastrodia elata	42.550
	SRR5643524	five period of Gastrodia elata	42.020
	SRR5643525	five period of Gastrodia elata	26.270
	SRR5643528	five period of Gastrodia elata	32.760
	SRR5643658	five period of Gastrodia elata	31.600
	SRR5643659	five period of Gastrodia elata	53.360
	SRR5643660	five period of Gastrodia elata	59.040
	SRR5643661	five period of Gastrodia elata	57.190
	SRR5643662	five period of Gastrodia elata	59.510
	SRR5643663	five period of Gastrodia elata	58.750
	SRR5643664	five period of Gastrodia elata	62.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	51.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	51.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	57.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.450
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	49.240
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.090
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.090
SRP279888	Gastro	Gastrodia elata tuber	75.13
	Juven	Juvenile tuber	79.10
	Mother_Gastro	Mother tuber of Gastrodia elata	23.72
	Mother_Juven	Mother tuber of Juvenile	60.84