Detail information of GWHGAAEX004562/evm.TU.scaffold_15.199
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383761900|ref|YP_005440882.1| | 2.00E-69 | homoserine dehydrogenase [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| KOG | KOG0455 | 2.00E-128 | Homoserine dehydrogenase |
| nr | gi|695047786|ref|XP_009411785.1| | 7.54E-143 | PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P49079|AKH1_MAIZE | 2.00E-41 | Homoserine dehydrogenase (Precursor) |
| trEMBL | tr|I1R3M0|I1R3M0_ORYGL | 2.00E-140 | Homoserine dehydrogenase {ECO:0000256|PIRNR:PIRNR036497} |
| TAIR | AT5G21060 | 2.00E-128 | Glyceraldehyde-3-phosphate dehydrogenase-like family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 4123311 | 4150952 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004562
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00742.18 | Homoserine_dh | 148 | 315 | 5.20E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006520 | Biological Process | cellular amino acid metabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.660 |
| SRR2545915 | Juvenile tuber | 10.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.470 |
| SRR5643514 | five period of Gastrodia elata | 9.460 | |
| SRR5643515 | five period of Gastrodia elata | 8.670 | |
| SRR5643524 | five period of Gastrodia elata | 8.940 | |
| SRR5643525 | five period of Gastrodia elata | 2.790 | |
| SRR5643528 | five period of Gastrodia elata | 4.890 | |
| SRR5643658 | five period of Gastrodia elata | 4.930 | |
| SRR5643659 | five period of Gastrodia elata | 6.230 | |
| SRR5643660 | five period of Gastrodia elata | 7.320 | |
| SRR5643661 | five period of Gastrodia elata | 5.650 | |
| SRR5643662 | five period of Gastrodia elata | 7.080 | |
| SRR5643663 | five period of Gastrodia elata | 7.140 | |
| SRR5643664 | five period of Gastrodia elata | 5.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.020 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.06 |
| Juven | Juvenile tuber | 7.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.72 | |
| Mother_Juven | Mother tuber of Juvenile | 4.94 |