Detail information of GWHGAAEX004563/evm.TU.scaffold_15.200


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG30962.00E-84Spliceosome-associated coiled-coil protein
nrgi|672190938|ref|XP_008775382.1|1.04E-130PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Phoenix dactylifera]
Swissprottr|Q949S9|SPF27_ARATH5.00E-91Pre-mRNA-splicing factor SPF27 homolog
trEMBLtr|K3XL72|K3XL72_SETIT2.00E-109Uncharacterized protein {ECO:0000313|EnsemblPlants:Si002645m}
TAIRAT3G18160_22.00E-84Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001941533264164330-
Transcript Sequence

Network for GWHGAAEX004563

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05700.10BCAS2282319.60E-68
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12861BCAS2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0006397Biological ProcessmRNA processing

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms127.460
SRR2545915Juvenile tuber157.420
SRP108465SRR5643513five period of Gastrodia elata119.560
SRR5643514five period of Gastrodia elata92.450
SRR5643515five period of Gastrodia elata103.110
SRR5643524five period of Gastrodia elata100.160
SRR5643525five period of Gastrodia elata83.500
SRR5643528five period of Gastrodia elata84.420
SRR5643658five period of Gastrodia elata65.530
SRR5643659five period of Gastrodia elata153.340
SRR5643660five period of Gastrodia elata180.450
SRR5643661five period of Gastrodia elata155.340
SRR5643662five period of Gastrodia elata142.120
SRR5643663five period of Gastrodia elata140.730
SRR5643664five period of Gastrodia elata184.060
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_186.430
SRR6049655Rhizomagastrodiae_C368-T10_good_188.840
SRR6049656Rhizomagastrodiae_C368-T07_good_182.830
SRR6049657Rhizomagastrodiae_C368-T07_good_198.760
SRR6049658Rhizomagastrodiae_C368-T04_good_157.760
SRR6049659Rhizomagastrodiae_C368-T04_good_158.340
SRR6049660Rhizomagastrodiae_C368-T01_good_183.240
SRR6049661Rhizomagastrodiae_C368-T04_good_152.240
SRR6049662Rhizomagastrodiae_C368-T01_good_178.880
SRR6049663Rhizomagastrodiae_C368-T01_good_170.610
SRR6049664Rhizomagastrodiae_C368-T10_good_183.820
SRR6049665Rhizomagastrodiae_C368-T10_good_183.820
SRP279888GastroGastrodia elata tuber 178.22
JuvenJuvenile tuber226.85
Mother_GastroMother tuber of Gastrodia elata 98.59
Mother_JuvenMother tuber of Juvenile 187.06