Detail information of GWHGAAEX004567/evm.TU.scaffold_15.205
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|440681967|ref|YP_007156762.1| | 1.00E-30 | Cl- channel voltage-gated family protein [Anabaena cylindrica PCC 7122] |
| KOG | KOG0474 | 0 | Cl- channel CLC-7 and related proteins (CLC superfamily) |
| nr | gi|695017305|ref|XP_009395587.1| | 0 | PREDICTED: chloride channel protein CLC-d isoform X2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P92943|CLCD_ARATH | 0 | Chloride channel protein CLC-d |
| trEMBL | tr|A0A067G542|A0A067G542_CITSI | 0 | Chloride channel protein {ECO:0000256|RuleBase:RU361221} |
| TAIR | AT5G26240 | 0 | chloride channel D |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 4329234 | 4389753 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004567
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00654.19 | Voltage_CLC | 129 | 553 | 1.10E-94 |
| PF00571.27 | CBS | 603 | 645 | 0.0058 |
| PF00571.27 | CBS | 706 | 750 | 2.30E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006821 | Biological Process | chloride transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0005247 | Molecular Function | voltage-gated chloride channel activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.730 |
| SRR2545915 | Juvenile tuber | 12.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.620 |
| SRR5643514 | five period of Gastrodia elata | 9.690 | |
| SRR5643515 | five period of Gastrodia elata | 8.670 | |
| SRR5643524 | five period of Gastrodia elata | 10.450 | |
| SRR5643525 | five period of Gastrodia elata | 13.190 | |
| SRR5643528 | five period of Gastrodia elata | 10.520 | |
| SRR5643658 | five period of Gastrodia elata | 9.310 | |
| SRR5643659 | five period of Gastrodia elata | 11.320 | |
| SRR5643660 | five period of Gastrodia elata | 10.910 | |
| SRR5643661 | five period of Gastrodia elata | 11.320 | |
| SRR5643662 | five period of Gastrodia elata | 11.220 | |
| SRR5643663 | five period of Gastrodia elata | 11.850 | |
| SRR5643664 | five period of Gastrodia elata | 10.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.410 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.57 |
| Juven | Juvenile tuber | 16.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.00 | |
| Mother_Juven | Mother tuber of Juvenile | 17.94 |