Gene detail

Detail information of GWHGAAEX004568/evm.TU.scaffold_15.207

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672163675\|ref\|XP_008801696.1\|	0	PREDICTED: protein OBERON 4-like [Phoenix dactylifera]
Swissprot	tr\|Q94B71\|OBE3_ARATH	2.00E-100	Protein OBERON 3
trEMBL	tr\|M0RZE8\|M0RZE8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P12900_001}
trEMBL	tr\|M0RZE8\|M0RZE8_MUSAM	4.00E-35	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P12900_001}
TAIR	AT1G14740	6.00E-100	Protein of unknown function (DUF1423)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	4461481	4475364	-

Transcript Sequence
>GWHTAAEX004568 TGGACAGCGGTCAGTAGTTGTGGACTGTGAAGAATCGAATGGTCCCGCCGCGCCCCCTTGCCTTAATGATATATAATGACGAAAGCTGGCCCTGGCACTCTCAGTCCGGCCTTACCGAGTGGCGACAAGTTGCGTTGACTGCAAGGAAACGAAGAATGCGGAGGAAAGGAACGCACTCTAGGTAGAGTCCAAAGTCGTCTTTTCCTCTAGCTCTGTACCCTTTCCTCGCCTCCTTCTTTCTCTCCGATTTCCCGTGGCTGCGCCTCTTTTATCGCCGGAAATCATCTATTCCATGAAGAATTTTAGGGTTGCGGTGAGGTAGCTTCGTTCCTGAAAAGTAAGCTGGTTTCGGTTTCTCTCGATGAAGAGGCTGAGACCCTACTGCGAGGATCTGGACGATGTCGCCGAAAAGGGCTGGGAGAGGAGGGAGGTCGACCCGGACCGGTCGTCATTGCGCCGCCATTTCTATGCGAAATCGGAGAGCCTTCGAAGATCTTCTTCGTTGATGTACGATAGATCGATCGATGATGAACGCGAGGGCTTGCGGCTTCCGCGGAAGCGGTACGAGCATGAGATGGACGGATTTGATAGGCGGAAGAGTTTCGATCGATATCGGGATGGCAGTGATAGGGCGATGCAAGTTTCGTCGCCTCGAGGTTCGTATGGGAGCGAGAGATTGCACCGATCAGATAGCTTTTCGGCCATAAGGAGGGATTTTCCGAAAGGTTTTAGATCGGAGAGGGATCGTTCGCGGAGGGATGGCTGTGGGGGTTTATCGTGGAAGAGATTGAGCTGTGGGAAGGATGCTGTTGATGAAGAGAAGAGGTCCTCTGGTGGAGATTCGGAAGAAAGGGGTAAGTTTAGATTGAGGGATTTATCCTGTCGTCAGAATGCAAAAGATGCTGAGTCTGTCAAGGTAAAGATTGAGAAGGTGCTGAAAGAGAGCTGCAGCAGTAGTGAGATGGAGGAAGGGGAGCTTAAACCCGATCCATTACCATCTTATGATACGAGAGGGCAGGCTGAGAAGGCACAGCATTTTGAGGATAATGGGGATGTGATTAAGGGTGTGTCTGAAGCCAGTCCGGAGAACAAGAACGTGCAATTGAGTGCGAAAAAGTCAGATTCTGTTGAAGAGACTTCAAGCGGAGAAAGATTAATGGAGATGGAAGTGGATCGGATAACTAAACATCTCTCTTTGCACGAGGAACGTGTTGAGGTTATTAAGAAACTGGATGAAGAAGAAAGCGATGAGGCAGAAGGCTTCATTGAAAGGAGAGAACAAACCCGGAGCTTGTCTGAAAGGCAAGGGAAAGCTGAGCACTCGGCTGAAGAGACTTGTGAAGAAGAAAAGCTTGAAGGTACTTCTTGTGTGGAGAAGTATGAAAGATTTGACTGTGAAAACCCTTGTGTAACTCTTCAGGTTTCCAACCTTGATATGAAGAATCCGTCTGAGCAGTCGAAGGCTAAGGATAATGAACTTGTCAATAGTTATACTTCTTTAGAAGAAAATTTAGAGGAGACTGTGCATGTTAAAGAGATTGAGTTGGAGGTTGAAACTAATGAGGGGATATGTGGCATCGTTGGAGCCATGCAGAAGAACGACAAAGGTATTGGTCTACTTAGTTTTGAAAAGGAGCAAAGGCAAAGAAAAGACATTAATCTTCAAGCAGCAATCAATTGTGAAGCTGAGTGCAGCAATTCAGTTAAGGATATTAAATTTGAGATTAACCTGACATTGGAAACTGTGGCAAAAAACTCTAGAGATAAGGGTAAAAGTGTTGCCCATACTCTTTCAAACATGGTAGATTATACTGAGGATGAGGATGCCTTTGAAGGCCCTAGTCGCAGGGGTTTTGAGCTTGTTTTTACGGATCGTATATCTCAGCCAGATAAGGCTCAAAGTTGTGCTCTTGGTGGTGAAAAGATAAAGAATGCCGAACTTAAATTGGAACCATTGGAACTTACTCTTGGTTTGCCTAGTGCTCTTCCAGATCAGAGTCCTAAACCTCTAAACTCAAAACCATGTTCTCCTGGCCATACACTGAGCATTCAATCTTTTGCATCTTCATTTCAAACAATCTCTGATGGATTCACAAATACAATCTCATTCTCAAACTCTCAGCCCATTGTATGCAATCCTAACTGTTCTCTCACACAGAGCTCAATGGACAACTTTGAACAGTCAGTTGGCAGCCGCTCTATATTTCAGAGTGTAGATCAGGCTTCCATTGGTACTGTATGGCAATCTCAGACATCCTTGGAGCCCAAAAGGAAGGGAAGATCTGGGGCGCTGTTTCACAGAGTTCTTTTGAACTGTAATCAGTCCCATAACTCGCTTCAGGGTATTAACGGACCTCATAATTTGAACCCCAAGGCATTATTGTTGCAACCAAGTTTCCAAAAACAAGAATCCCCTCCTCAGAGTGTTGGATCTCATGACACGCAATCCGAATGCAGTAAAGATAAGGGGGTGTTAGAAAGAGAGAGAAGCTTTAACAGCTTTTCTAGGAGCGAGCAACCTGAGAGTGAACAGGTTGTTGTTAATACACCGAGTGTTGTCATGAGGATTATGTCTAGAATAGTCTCTGAACCTTTTCAAGTAATGGAGAGGATGCTTCAAGATATGACTGAGCATTCAATTGAGTATCTAAAGGATTCTATTTGTAAGATGCTTGCTGATGCGGATAAACGTGGGCAAATACATGCATTGCAGGCGGTACTCCAGAGAAGGTCTGATTTAACTGTAGAAACTTTGGAAAGGTCCCTACAGATTCTGTTGAAGATATTGGTTTCTTTGAAGACCGGTCTTCCAGATTTCCTTCAGAGACTGAATAATACGCCATCCTCTGATCTTGTTGAGATATATCACAACTTGAAGTGTCGTAATAATGCGTGTGGGAGCATGTTACCTGTTGATGATTGTGATTGCAAAATCTGCTCTCAAAAGAATGGTTTTTGTAGCGCTTGCATGTGTCTCATTTGTTCTAAATTTGACATGGCATCTAATACATGCAGTTGGGTTGGCTGTGATGTGTGTCTCCACTGGTGCCATACAGATTGTGGGTTACGTGGTTCTCATATTAGAAATGGGCAAAGTTCAGTGGCTCTTGGAGCCACGGAAATGCAGTTTCACTGTCTTGCCTGTGGTCACCCTTCTGAGATGTTTGGCTTTGTTAAGGAAGTTTTTAAAATGTGTTCCCGGAACTGGAAAGTTGAAAATCTTGCTAAGGAGCTTCAGTATGTGATGAGAATTTTTTGTGCCAGTAATGATTTGAGGGGTAAAAGTTTGTACCAAGTTGCTGGTCAGATGCTAGTGAAATTGGAAGATAAAAAGAAGCATTTTGATGTAATAGAAAGCATCATGTTATTTCTTTCAGAAAGCGAATCCAGCACCGCCAGCGCCGCTCCTCTACCTCCCCTTCCATACTCTTCGTTCGGAGAAGAGCCGTCCGGAAACAACTGTCAAGCAGCCAACGCGGTCCCGTCGAACAGAGCTTCGTGCGTCGGTTTCGAGGAGGAGCGGCGGACGCCGGACGAGCTGGAGGGCATCGTCGGGTTCAAAAGGGCGGAGGCGGAGATGTACCAAGAGCGGTCGGACAGCGCCCGGCGGGAGGCCGAGGGCCTGAAGCGCATTGCGGCGGCAAAGAACGGGAGGATCGACGAGGAGTACATCGGCGCGGTGGCGAGGGTTGGGCTGCAGGAGGCCGAGAAGAAGCGCAAGCTGAGGCTCGAGGAGCTGCAGGCTGCCGAGCGGGCGCACGGCGACTTTGTTTCCTTGAAAATGAAGATGGAGGCCCAGATCAAGGATTTGCTCTTGAAGATGGAAGCCGCCAGCCACAATTTCAGTCTATGAACAAGCCTCCCCCCCCTCTCTTTTTTTCTCTCTCTCTCTCTCTCTCT

Network for GWHGAAEX004568

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07227.10	PHD_Oberon	840	962	1.40E-36
PF16312.4	Oberon_cc	1053	1151	4.50E-29

Protein Sequence

>GWHPAAEX004568
MKRLRPYCEDLDDVAEKGWERREVDPDRSSLRRHFYAKSESLRRSSSLMYDRSIDDEREGLRLPRKRYEHEMDGFDRRKSFDRYRDGSDRAMQVSSPRGSYGSERLHRSDSFSAIRRDFPKGFRSERDRSRRDGCGGLSWKRLSCGKDAVDEEKRSSGGDSEERGKFRLRDLSCRQNAKDAESVKVKIEKVLKESCSSSEMEEGELKPDPLPSYDTRGQAEKAQHFEDNGDVIKGVSEASPENKNVQLSAKKSDSVEETSSGERLMEMEVDRITKHLSLHEERVEVIKKLDEEESDEAEGFIERREQTRSLSERQGKAEHSAEETCEEEKLEGTSCVEKYERFDCENPCVTLQVSNLDMKNPSEQSKAKDNELVNSYTSLEENLEETVHVKEIELEVETNEGICGIVGAMQKNDKGIGLLSFEKEQRQRKDINLQAAINCEAECSNSVKDIKFEINLTLETVAKNSRDKGKSVAHTLSNMVDYTEDEDAFEGPSRRGFELVFTDRISQPDKAQSCALGGEKIKNAELKLEPLELTLGLPSALPDQSPKPLNSKPCSPGHTLSIQSFASSFQTISDGFTNTISFSNSQPIVCNPNCSLTQSSMDNFEQSVGSRSIFQSVDQASIGTVWQSQTSLEPKRKGRSGALFHRVLLNCNQSHNSLQGINGPHNLNPKALLLQPSFQKQESPPQSVGSHDTQSECSKDKGVLERERSFNSFSRSEQPESEQVVVNTPSVVMRIMSRIVSEPFQVMERMLQDMTEHSIEYLKDSICKMLADADKRGQIHALQAVLQRRSDLTVETLERSLQILLKILVSLKTGLPDFLQRLNNTPSSDLVEIYHNLKCRNNACGSMLPVDDCDCKICSQKNGFCSACMCLICSKFDMASNTCSWVGCDVCLHWCHTDCGLRGSHIRNGQSSVALGATEMQFHCLACGHPSEMFGFVKEVFKMCSRNWKVENLAKELQYVMRIFCASNDLRGKSLYQVAGQMLVKLEDKKKHFDVIESIMLFLSESESSTASAAPLPPLPYSSFGEEPSGNNCQAANAVPSNRASCVGFEEERRTPDELEGIVGFKRAEAEMYQERSDSARREAEGLKRIAAAKNGRIDEEYIGAVARVGLQEAEKKRKLRLEELQAAERAHGDFVSLKMKMEAQIKDLLLKMEAASHNFSL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.630
SRP064423	SRR2545915	Juvenile tuber	34.580
SRP108465	SRR5643513	five period of Gastrodia elata	24.010
	SRR5643514	five period of Gastrodia elata	17.100
	SRR5643515	five period of Gastrodia elata	20.470
	SRR5643524	five period of Gastrodia elata	17.900
	SRR5643525	five period of Gastrodia elata	26.450
	SRR5643528	five period of Gastrodia elata	27.890
	SRR5643658	five period of Gastrodia elata	29.470
	SRR5643659	five period of Gastrodia elata	23.320
	SRR5643660	five period of Gastrodia elata	23.090
	SRR5643661	five period of Gastrodia elata	24.700
	SRR5643662	five period of Gastrodia elata	23.930
	SRR5643663	five period of Gastrodia elata	19.770
	SRR5643664	five period of Gastrodia elata	26.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.220
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.720
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.720
SRP279888	Gastro	Gastrodia elata tuber	15.29
	Juven	Juvenile tuber	57.26
	Mother_Gastro	Mother tuber of Gastrodia elata	20.41
	Mother_Juven	Mother tuber of Juvenile	37.73