Detail information of GWHGAAEX004569/evm.TU.scaffold_15.208
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|147919319|ref|YP_686945.1| | 1.00E-09 | 30S ribosomal protein S14P [Methanocella arvoryzae MRE50] |
| KOG | KOG3506 | 2.00E-28 | 40S ribosomal protein S29 |
| nr | gi|297738544|emb|CBI27789.3| | 1.59E-32 | unnamed protein product [Vitis vinifera] |
| Swissprot | tr|Q5I7K3|RS29_WHEAT | 2.00E-29 | 40S ribosomal protein S29 |
| trEMBL | tr|D7TCD1|D7TCD1_VITVI | 6.00E-33 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI27789.3} |
| TAIR | AT3G44010 | 2.00E-28 | Ribosomal protein S14p/S29e family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 4506163 | 4526378 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004569
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00253.20 | Ribosomal_S14 | 7 | 54 | 2.30E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02980 | RP-S29e, RPS29 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0015935 | Cellular Component | small ribosomal subunit |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.190 |
| SRR2545915 | Juvenile tuber | 52.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 70.980 |
| SRR5643514 | five period of Gastrodia elata | 68.020 | |
| SRR5643515 | five period of Gastrodia elata | 50.870 | |
| SRR5643524 | five period of Gastrodia elata | 66.810 | |
| SRR5643525 | five period of Gastrodia elata | 28.950 | |
| SRR5643528 | five period of Gastrodia elata | 31.730 | |
| SRR5643658 | five period of Gastrodia elata | 24.400 | |
| SRR5643659 | five period of Gastrodia elata | 25.420 | |
| SRR5643660 | five period of Gastrodia elata | 43.870 | |
| SRR5643661 | five period of Gastrodia elata | 47.420 | |
| SRR5643662 | five period of Gastrodia elata | 54.420 | |
| SRR5643663 | five period of Gastrodia elata | 40.190 | |
| SRR5643664 | five period of Gastrodia elata | 38.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 105.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 141.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 130.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 111.130 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 114.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 66.840 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 144.270 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 112.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 240.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 171.740 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 218.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 218.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 154.21 |
| Juven | Juvenile tuber | 91.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 145.35 | |
| Mother_Juven | Mother tuber of Juvenile | 42.26 |