Detail information of GWHGAAEX004570/evm.TU.scaffold_15.209_evm.TU.scaffold_15.210
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743859417|ref|XP_010942738.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g27270 [Elaeis guineensis] |
| Swissprot | tr|O04647|PP399_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g27270 |
| trEMBL | tr|M0U794|M0U794_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP07830_001} |
| TAIR | AT5G27270 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 4559776 | 4567349 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004570
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 161 | 210 | 1.30E-09 |
| PF01535.19 | PPR | 271 | 299 | 0.01 |
| PF13812.5 | PPR_3 | 324 | 385 | 2.80E-08 |
| PF01535.19 | PPR | 410 | 437 | 0.26 |
| PF01535.19 | PPR | 515 | 542 | 0.028 |
| PF13041.5 | PPR_2 | 681 | 726 | 9.70E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.010 |
| SRR2545915 | Juvenile tuber | 6.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.440 |
| SRR5643514 | five period of Gastrodia elata | 5.620 | |
| SRR5643515 | five period of Gastrodia elata | 4.930 | |
| SRR5643524 | five period of Gastrodia elata | 6.140 | |
| SRR5643525 | five period of Gastrodia elata | 6.380 | |
| SRR5643528 | five period of Gastrodia elata | 5.690 | |
| SRR5643658 | five period of Gastrodia elata | 5.650 | |
| SRR5643659 | five period of Gastrodia elata | 5.350 | |
| SRR5643660 | five period of Gastrodia elata | 3.480 | |
| SRR5643661 | five period of Gastrodia elata | 3.460 | |
| SRR5643662 | five period of Gastrodia elata | 5.580 | |
| SRR5643663 | five period of Gastrodia elata | 3.710 | |
| SRR5643664 | five period of Gastrodia elata | 4.820 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.010 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.850 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.17 |
| Juven | Juvenile tuber | 7.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.18 | |
| Mother_Juven | Mother tuber of Juvenile | 8.17 |