Gene detail

Detail information of GWHGAAEX004573/evm.TU.scaffold_15.217

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158318503\|ref\|YP_001511011.1\|	2.00E-25	WD-40 repeat-containing serine/threonin protein kinase [Frankia sp. EAN1pec]
KOG	KOG0032	0	Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
nr	gi\|472178208\|gb\|AGI21023.1\|	0	calcium-dependent protein kinase 3 [Dendrobium catenatum]
Swissprot	tr\|Q38873\|CDPK7_ARATH	0	Calcium-dependent protein kinase 7
trEMBL	tr\|W8CMD4\|W8CMD4_9ASPA	0	Calcium-dependent protein kinase 3 {ECO:0000313\|EMBL:AGI21023.1}
TAIR	AT5G19450	0	calcium-dependent protein kinase 19

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	4925413	4928538	-

Transcript Sequence
>GWHTAAEX004573 GGGGGGAGAAAGCGAGAGATACAAGTCTTCTTTGGATGGAGGCTGACCCTTTCCCCCCCACCACAAATGGCCGTTTCAAACCCTCCATGAATCTCTTTTCCCCTTTCAGCCATTAAATAAATCCCATCTCTCAAACCTTTCTTTCCAACAGCTTCTTCAGAAATGGGTAATTGCTGCGCCAAGCCGGTTTCTGCTTCGGAGAAGGAGAACAAGGAGGCGCATAAGAAGAAGAAAAAGCCAAATCCGTTCACACTAGAGTACAACAGAACGCCTAACCACAGCGCTCCTAAGCTTGTGGTTCTCCAAAATCCCACTGGCGGTGATATTTTAAGCCGCCATGAGCTCGGCAATGAGCTAGGAAGGGGTGAGTTTGGGGTTACACATCTCTGCACTGATAAAGAGACGCGGGAAAAGTTTGCATGTAAGTCTATATCGAAGATTAAGCTGCGGACTGCTGTTGACATTGAGGATGTGCGGAGGGAAGTTGAGATTATGAGGCATATGCCGTCTCATGTCAATGTTGTGAGCTTGAAGGAAACTTACGAGGATGATAGTGCTGTGCATCTTGTTATGGAGCTCTGTGAAGGCGGAGAGCTGTTTGACAGGATTGTTGCAAGAGGGCATTATACTGAGAGAGCTGCTGCTGCCATTACAAAGACCATTGTTGAGGTTGTGCAGGTGTGTCATAAGAATGGAGTGATGCATCGGGACCTTAAGCCTGAGAACTTTTTGTTTGCTAACAATAAGGAAAATGCTGCTCTTAAAGCTATTGATTTTGGCCTTTCTGTATTTTTCAAGCCTGGTGAACGGTTTAACGAGATTGTTGGAAGTCCTTATTACATGGCGCCAGAGGTTCTAAAGCGTAATTATGGGCAAGAAATTGATGTATGGAGTGCTGGAGTTATATTGTACATCCTTCTATGCGGCGTACCACCATTTTGGGCAGAAACTGAGCAGGGAGTTGCTCAAGCCATTATTCGCTCTGTTTTAGATTTTAGAAGAGATCCATGGCCTAAAGTTTCTGATAGCGCTAAAGATCTGGTTAAGAAGATGCTTGATCCCGATCCAACTAAGCGATTATCAGCTCAAGAAGTTCTTGCTCATCCTTGGCTGCAGAATGCAAAGAAAGCTCCGAATGTGAGCCTGGGAGAGACAGTTCGAGCAAGATTTCAGCAGTTCTCTGTAATGAACAAGTTCAAAAAGAGAGCTCTCAGGGTTGTTGCCGAGCATTTAAGTGTGGAAGAAGTTGCTGACATAAAGGAGATGTTCAAAAAGATAGACATAAACAACAATGGAAAAGTAACACTTGAAGAACTGAAGTATGGACTTCACAAGCACGGGCACCAGATCCCAGATGCAGATGTGCAGATACTAATGAATGCTGCTGATGGAGATGGAACTCTAGAATATGGTGAATTTGTGGCCATTTCGATTCACTTAAAGAAATTGGGCAATGACGAGCATCTTCACAAAGCCTTCGCCTTCTTCGATCAGAACAAAAGCGGCTTTATCGAGATTGAAGAGCTCAGCGATGCACTTGCAGATGACATGGGTTCCAACAATGAGGAAGTCATCAATGCCATTATCAATGATGTAGATACTAACAAGGATGGAAAAATTAGCTATGATGAATTTGCAGCAATGATGAAAGCAGGAACAGATTGGAGGAAGGCTTCAAGGCAATATTCTCGTGAGAGATTCACTAGCCTCAGCTTGAAGCTGATGAAGGATGGATCACTGCAGATGAAAAATGATGGCAGAA

Network for GWHGAAEX004573

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	62	317	1.20E-74
PF00036.31	EF-hand_1	364	391	4.90E-07
PF13499.5	EF-hand_7	433	496	8.90E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005509	Molecular Function	calcium ion binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	64.370
SRP064423	SRR2545915	Juvenile tuber	110.790
SRP108465	SRR5643513	five period of Gastrodia elata	41.840
	SRR5643514	five period of Gastrodia elata	37.240
	SRR5643515	five period of Gastrodia elata	56.990
	SRR5643524	five period of Gastrodia elata	56.470
	SRR5643525	five period of Gastrodia elata	17.860
	SRR5643528	five period of Gastrodia elata	44.500
	SRR5643658	five period of Gastrodia elata	26.840
	SRR5643659	five period of Gastrodia elata	25.350
	SRR5643660	five period of Gastrodia elata	13.200
	SRR5643661	five period of Gastrodia elata	17.290
	SRR5643662	five period of Gastrodia elata	28.470
	SRR5643663	five period of Gastrodia elata	14.110
	SRR5643664	five period of Gastrodia elata	7.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.230
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.620
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.910
SRP279888	Gastro	Gastrodia elata tuber	3.16
	Juven	Juvenile tuber	7.08
	Mother_Gastro	Mother tuber of Gastrodia elata	16.88
	Mother_Juven	Mother tuber of Juvenile	13.23