Detail information of GWHGAAEX004576/evm.TU.scaffold_15.225
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1561 | 2.00E-37 | CCAAT-binding factor, subunit B (HAP2) |
| nr | gi|672109578|ref|XP_008790800.1| | 8.64E-75 | PREDICTED: nuclear transcription factor Y subunit A-1 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q945M9|NFYA9_ARATH | 6.00E-38 | Nuclear transcription factor Y subunit A-9 |
| trEMBL | tr|M0SMX4|M0SMX4_MUSAM | 3.00E-64 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P11090_001} |
| TAIR | AT3G20910 | 2.00E-37 | nuclear factor Y, subunit A9 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 5629013 | 5639501 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004576
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02045.14 | CBFB_NFYA | 139 | 194 | 1.40E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YA |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08064 | NFYA | Antigen processing and presentation | map04612 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0016602 | Cellular Component | CCAAT-binding factor complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 112.450 |
| SRR2545915 | Juvenile tuber | 71.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 66.580 |
| SRR5643514 | five period of Gastrodia elata | 76.260 | |
| SRR5643515 | five period of Gastrodia elata | 70.630 | |
| SRR5643524 | five period of Gastrodia elata | 72.940 | |
| SRR5643525 | five period of Gastrodia elata | 64.190 | |
| SRR5643528 | five period of Gastrodia elata | 25.230 | |
| SRR5643658 | five period of Gastrodia elata | 24.810 | |
| SRR5643659 | five period of Gastrodia elata | 64.500 | |
| SRR5643660 | five period of Gastrodia elata | 78.820 | |
| SRR5643661 | five period of Gastrodia elata | 60.430 | |
| SRR5643662 | five period of Gastrodia elata | 53.770 | |
| SRR5643663 | five period of Gastrodia elata | 49.440 | |
| SRR5643664 | five period of Gastrodia elata | 59.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 86.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 58.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 98.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 91.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 95.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 82.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 81.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 63.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 69.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 55.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 55.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 112.73 |
| Juven | Juvenile tuber | 93.82 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 81.50 | |
| Mother_Juven | Mother tuber of Juvenile | 76.12 |