Gene detail

Detail information of GWHGAAEX004581/evm.TU.scaffold_15.231

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1595	CCCH-type Zn-finger protein
nr	gi\|743884550\|ref\|XP_010909716.1\|	PREDICTED: zinc finger CCCH domain-containing protein 24-like [Elaeis guineensis]
Swissprot	tr\|Q10EL1\|C3H24_ORYSJ	Zinc finger CCCH domain-containing protein 24
trEMBL	tr\|C5WNW0\|C5WNW0_SORBI	Putative uncharacterized protein Sb01g011150 {ECO:0000313\|EMBL:EER93617.1}
TAIR	AT2G41900	CCCH-type zinc finger protein with ARM repeat domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	6026641	6028701	+

Transcript Sequence
>GWHTAAEX004581 ATGAATCAGCTTACTGTGGAGGTCAAAGACACATTCGCTAGCGTTCTTGAGCTCGCTGCTAATAACGATGTGGAGGGTTTCAAGCGATTTGTGGATCGAGACCCTTCGGCTGTTGATGAGATTGGTGAGTGGTACGGGCGCAAAAAGGTGATCGAGCCTCGAACGCCGCTGATGGTCGCAGCCATCTATGGCAGCCTCGATGTGCTCGAGCTGATTCTTAGTCTCTCCTCTGAGAACGTGAACAGATTCTGCGGCCCTGATAAAACTACTGCCCTCCATTGCGCTGCTTCTGGAGGCTCTGCGAATGCTGTTGAGGCTGTCAGAATCCTTCTCTCAGCTGGAGCTGATCCTAACTGCGTTGATGCTATTGGGCATCGGCCGGCTGATGTGATTTCTGTACCTCCTATGCTTTCTAATGGGAAAACTGCTCTAGAAGAACTTCTAGGATGCTCGGATGGATCCGTGGCTCGTGAGATTCATCGCCAAGGACTTTGGGTATCCACATGCTCATCGAACTCCAATTCTCCTTCACTTTCATCATCAGCTGAGGATCAGGGCGGGTCACCTTCCTCCGATTCTTCTTCCTCTCCGATGACCGGAAAATATCAAGAGCTGCCATCTCTTCCGGAGAAGAAAGAGTACCCTGTGGATCCTTCTCTCCCCGATATCAAGAACAGCATGTATGCCACGGACGAATTCCGAATGTTCTCGTTCAAGGTCCGCCCTTGCTCCAGGGCTTACTCCCATGACTGGACTGAGTGCCCCTTTGTTCACCCGGGAGAGAACGCCCGGCGTCGCGACCCCCGCAAGTTTCATTACAGCTGCGTCCCTTGCCCCGACTTTCGGAAAGGCGCTTGCCGTCGGGCGGATATGTGCGAGTACGCGCACGGGGTGTTTGAGTGTTGGCTTCACCCAGCGCAATACCGCACGAGGTTATGCAAGGACGGGACGAATTGCGCGAGGAGGGTTTGTTTCTTTGCACACACCAACGACGAACTCCGTCCGCTCTACATGTCCACGGGCTCGGCCGTTCCTTCGCCGAGATCCACCGCCATGGAAATGGCCGCTCTCGGGATCATGCCGAGCTCGCCATCGTCTGTGTCCGCGGTCATGTCCCCGTTCACCCCGCCGATGTCGCCTTCCTCCAATGGGGTTTCCCATTCCTCCATCAATTGGCCGCAGCCTAACGTCCCCGCGCTTCACCTTCCCGGAAGCAATCTCCAGTCTAGCAGGCTCCGATCGTCTCTCAGCGCGAGAGACATGCCGTTGGACGAGTGTTTCAGCCCTGAGATGGAGGCCCATCAGCTGATGACGGATCTGTACATCTCTCGGTTCGGCAACAGGGCTGCTGCCTCTCGGTCGAAAAGTCTGGCTGCGTCCAATCTCGATGATCTATTTTCTGCTGAGATTTCATCCTCTCCGAGGTATAGCTCCGACCAGGCGGCTGCTATGTTTTCTCCTTCACACAAGACGGCAATCCTCAATCAGTTTCAGCAGCACCAGCAGAACCTCCTTTCTCCGATCAACACGGGGATGTTTGCCACCAAAGCTTTGGATCAGCAGCTTTCCGGGCACTCCTCGCTCCTGCAGGCCTCTCTGGGATTATCTTCATCTCCGGGAAGGATGTCCCCGAGAAGCATGGACCCTGTGTCCCCGATGAGTTCCCGTCATTCTGCCTTTGTTCAGCTTGAAAAGCAGCAGCAGCAGCAGCAGAGGCAGCAGCAGACTCTGAGGAGTCTAAGCTCCAGAGATCTTGGGGCTGGAGCGTCATCCGCAATTGCGGGGTCTCCCCTGAGCTCGTCCTGGTCCAAGTGGGGCTCGCCCTCCGGAATGCTGGATTGGGGCGTGAATGGCGAAGAGCTGGGCAGGCTCAGGCGCTCGTCTTCCTTCGAGCTGCGCCCCAACGGAGAAGAGCCTGATATCTCTTGGGTTCATTCCCTCGTGAAGGAGGCCACCCCTGAGAAGCCTGCGGCCAAATCCGCAGGTATGGTCTCCAATGGAGAAGCCGATCTCGACGATTATGTTCATGCAGGTGCAATTGGAGCTTGGCAGGAGCAGTAG

Network for GWHGAAEX004581

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.6	Ank_2	48	120	2.60E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.150
SRP064423	SRR2545915	Juvenile tuber	29.610
SRP108465	SRR5643513	five period of Gastrodia elata	44.140
	SRR5643514	five period of Gastrodia elata	43.750
	SRR5643515	five period of Gastrodia elata	37.140
	SRR5643524	five period of Gastrodia elata	41.600
	SRR5643525	five period of Gastrodia elata	66.580
	SRR5643528	five period of Gastrodia elata	50.310
	SRR5643658	five period of Gastrodia elata	53.160
	SRR5643659	five period of Gastrodia elata	37.890
	SRR5643660	five period of Gastrodia elata	40.700
	SRR5643661	five period of Gastrodia elata	39.680
	SRR5643662	five period of Gastrodia elata	52.890
	SRR5643663	five period of Gastrodia elata	37.160
	SRR5643664	five period of Gastrodia elata	41.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	57.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	63.510
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	52.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	49.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	53.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.020
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	59.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	63.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	65.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	65.800
SRP279888	Gastro	Gastrodia elata tuber	39.90
	Juven	Juvenile tuber	28.30
	Mother_Gastro	Mother tuber of Gastrodia elata	75.11
	Mother_Juven	Mother tuber of Juvenile	41.52