Gene detail

Detail information of GWHGAAEX004584/evm.TU.scaffold_15.236

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|294508332\|ref\|YP_003572390.1\|	2.00E-39	MATE efflux family protein [Salinibacter ruber M8]
KOG	KOG1347	0	Uncharacterized membrane protein, predicted efflux pump
nr	gi\|514820991\|ref\|XP_004985179.1\|	0	PREDICTED: MATE efflux family protein 1-like [Setaria italica]
Swissprot	tr\|Q9SYD6\|MATE1_ARATH	0	MATE efflux family protein 1
trEMBL	tr\|K4A7T6\|K4A7T6_SETIT	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}
TAIR	AT3G08040	0	MATE efflux family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	6428130	6442519	+

Transcript Sequence
>GWHTAAEX004584 TCTCTTTTCTTCTGAGGTGATCTCTTGATTGTAAATGCATTGACGGGCTGATTAGATTACATACTTTTATATATTTAAGATGAAGTTGTTATGAGGTTGTTTTTGGAGGTCTTTGAGTTATGCAATGTAGCCAAGTTGCTCAGTAATTAAGCTATATGGAGGCTGATTAGGAATGGCAGAACACGATAAGGACAACAATATGCTCTCCTTTTAACACAGTGGCTGTTTTGTTTTGTTGACTCTTATGCAGGAAATCAGAAACCTCTACTTTTGATCCAACTTAGAGAGTCTTTTACTTATGGAAAAGACTCATGATGCATCAAGTAAGGTGCTGTGTGGTCTTGATCCTCTTGAAGAAACAAGAAACATTCCACATGTATTGGTGGCTTTGAGTAAGACTGATACTGGTGATGAAGCTATGATGGGTGCTCCAATTTTATCACCTCCCGGAACTCCAAGGAAGGCTGGAGTATATTTATTTTTCCAGGACATATGGTGTGTTTTCAAGTTGGATGAGCTCGGGAGGGAGATTGCGAGAATCGCAATTCCTGCAGCACTGGCTTTAGCAGCTGATCCACTTGCTTCTTTGGTTGATACTGCATTTGTTGGCCGTTTAGGTTCAGTGGAGCTCGCTGCTGTAGGAGTTTCTATTGCTATATTCAACCAAGTTTCAAAGGTTGCTATTTATCCTCTTGTTAGTGTTACTACTTCTTTTGTAGCAGAGGAAGATGCATTATGCAGCAAAATCCTTGAAGAAAAAGGAAAAGTTGACTTGGAAAAACCCTCTGTGATGATAGATCAAACTAAAGAGTCATTTCCTTTCAGCGAAGTTTCCGATGCTAGAAAGAACAGATGCGATTTGCCAATTATTATCAATACATGCACAAACTTTTCAGAAATTGGGAATAAGCGGAAAAGCATTCCATCTGTGTCTACAGCCTTAGTTGTTGGCTTAGTTCTTGGAATTCTTCAGGCAATCCTTCTCACTGTCACAGCAAAATCTGTCTTGCATGTAATGGGAGTGAAAAGGGGGTCTCCAATGCTAGCCCCGGCACTGAGATACTTGACATTGCGGTCTGCTGGTGCACCTGCTGTACTTCTAACTTTGGCCATGCAAGGGGTTTTTCGTGGCTTCAAAGACACTAGGACACCCTTATATGCTACCACTGCGGGAGATTTGACCAACATTATTTTAGATCCATTGCTGATATTTGTTTTTCACATGGGTGTTAGTGGTGCAGCCATTGCCCATGTCGTATCTCAGTACCTTATCACCATTATACTGCTATGCAAATTAATAAAAAAGGTGGAGATTGTGCCACGTACCATCAAGTCTCTTAAATTTGCTAGGTTTCTCAGTTGTGGTTTTTTGCTTCTGGCAAGGGTAATTGCAGTGACTTTTTGTGTTACACTGGCGGCATCACTTGCTGCACGCCATGGACCAACTCCTATGGCTGCTTTTCAAATTGGTTTGCAAGTTTGGCTATCCACATCTCTCCTTGCTGATGGATTGGCTGTTGCTGGGCAGGCTATATTGGCTAGTGCATTTGCTATGGGAGATCTTCAAAAAGTAGCAGCTTCTGCATCCCGAGTTCTGCAGTTAAGTGTAGCGCTTGGTTTGGCCCTGTCAGTGTTGTTGGGAATTGTTTTGCAATTTGGGTCGGGAATCTTCACAAATGATGCCAATGTGATATCAGAAGTTCACAAAGCCATCCCTTTTATTGCTGGTACTCAAACTATAAACTCTTTGGCATTTGTATTTGATGGTGTCAACTTTGGAGCTTCAGATTACACATTTTCTGCTTATTCTATGGTTGCAGTTGCATCTGTGAGCATTCCATCTTTGGTGTTTCTTTCTAAAAGCCACGGTTTTGTTGGAATATGGATTGCACTAACAATTTACATGACTTTGAGAACGTTTGCTAGTGTTTGGAGGATGGGCTCAGCAACTGGACCATGGACATTTATTCGCAAATGAATTTATTCTATAAAGAATTACTGTGCATAGCCTGGAAAAATAATTATTTCCATCATGTGTAACAAAGCAGGTTTTCTTATTATAACGCTGATAAATAACTTCAATTTTACTGCCATATTGAGGGCATATTATTCTGGCTTTGGATGTTACTACTGATGTCTGTTGATTGTTTGTTCTATTTCTAGTTCTTAATATAGTTCAGATGTTAGTTCAAGTCCTCAAAATTTTTATTTTGATTGTCCTTTAATAATTGCTGCTTTGCTAGATTTATTTTGCTTGATTGTTGTGTATGTGGTTGAAATGTCATAGGATTATTCAG

Network for GWHGAAEX004584

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01554.17	MatE	203	302	1.10E-10
PF01554.17	MatE	363	514	3.80E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0042910	Molecular Function	xenobiotic transporter activity
GO:0015297	Molecular Function	antiporter activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.660
SRP064423	SRR2545915	Juvenile tuber	7.040
SRP108465	SRR5643513	five period of Gastrodia elata	10.260
	SRR5643514	five period of Gastrodia elata	11.070
	SRR5643515	five period of Gastrodia elata	7.960
	SRR5643524	five period of Gastrodia elata	9.450
	SRR5643525	five period of Gastrodia elata	15.960
	SRR5643528	five period of Gastrodia elata	4.590
	SRR5643658	five period of Gastrodia elata	24.660
	SRR5643659	five period of Gastrodia elata	8.460
	SRR5643660	five period of Gastrodia elata	7.000
	SRR5643661	five period of Gastrodia elata	5.060
	SRR5643662	five period of Gastrodia elata	4.740
	SRR5643663	five period of Gastrodia elata	6.860
	SRR5643664	five period of Gastrodia elata	3.990
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.210
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.720
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.700
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.530
SRP279888	Gastro	Gastrodia elata tuber	4.28
	Juven	Juvenile tuber	6.56
	Mother_Gastro	Mother tuber of Gastrodia elata	3.98
	Mother_Juven	Mother tuber of Juvenile	2.99