Gene detail

Detail information of GWHGAAEX004586/evm.TU.scaffold_15.243

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|269798805\|ref\|YP_003312705.1\|	6.00E-142	adenylosuccinate synthetase [Veillonella parvula DSM 2008]
KOG	KOG1355	0	Adenylosuccinate synthase
nr	gi\|743873234\|ref\|XP_010906765.1\|	0	PREDICTED: adenylosuccinate synthetase, chloroplastic-like [Elaeis guineensis]
Swissprot	tr\|Q6T7E8\|PURA_TOBAC	0	Adenylosuccinate synthetase, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03125} (Precursor)
trEMBL	tr\|M1C6L7\|M1C6L7_SOLTU	0	Adenylosuccinate synthetase, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_03125}
TAIR	AT3G57610	0	adenylosuccinate synthase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	6844266	6853787	+

Transcript Sequence
>GWHTAAEX004586 GATTTGGGGGTGCTCCCTAAAAATACTATCGATCGCCTCAACTGGACGCCATGAGCATAAGCGCTCTGTGCATCGAGCCGCCTCTCAGCTCCTTCGCGGGCTGCAATGGCGGAAATCGGTCCTCTTTATCGTTGACATCTCCGGCGAAAATTTTTTATAGAGGCCTCTGTTCGGAGAAGAGGACCTCAGCACTCGCTCTCGCACGTCTGGCGCACCGGCGCTTGGCCGCCGCTGTGGGCGCAGTGGAGGTTGAGAGAGGCGACGGATTCGGCCGAATCGATTCGCTTGGTCAAGTCACTGCGGTTCTGGGTTGCCAATGGGGCGATGAGGGAAAGGGAAAACTCGTTGATATTCTCGCTGAGCACTTCGACCTTGTGGCTAGATGTCAGGGTGGATCAAATGCTGGACACACCATCTATAATGCTTCTGGCAAGAAGTTTGCTCTGCATCTTGTGCCTTCGGGTATCCTCAATGAGAAAACCTTATGTATTATAGGTAATGGAGTCGTAGTGCATCTTCCAAGCCTATTTGATGAAATTGATGATTTGGAGTCCAATGGTGTATCCTGCAAAGGAAGAATATTGGTTTCTGATCGCGCACACTTATTATTTGATTTCCATCAAGTTGTCGATGAACTCGGAGAAGTAGAACTTGGGCATTCTCTTATTGGAACAACCAAAAAAGGAATTGGACCTTGTTATTCTAGTAAAATATCTCGCAATGGTATAAGGGTTTCCGATCTAAGGAATATGGATACATTTAGTCAAAAGTTTGAGATTCTAATAAAGGATGCAGCTGCACGTTTCCAGGGGTTTAAGTACAACGAAGATGTAATGAAAGAAGAGGTAGTTAGATATAAGAAGTATGCCGAACGCTTGGAGCCTTTCATTACTGATACTACTCATGTCATGCACAAGTCAATCCAACAAAAGAAAAAAATATTGGTTGAAGGTGGTCAAGCTACCATGCTGGATATTGATTTTGGAACTTACCCATTTGTAACCTCTTCAAATCCTTCAGCTGGGGGGATTTGCACTGGCCTTGGTATTCCTCCCAAATGCTTGGGTGACTTGGTTGGAGTTGTAAAATCTTATACTACGAGAGTGGGGTCAGGTCCTTTTCCAACTGAGGTCTTGGGTAAAGGAGGTGACATGCTTAGGGCAACTGGAATGGAATTTGGAACCACTACTGGTCGTCCTCGACGCTGTGGCTGGATTGATATTATTGCTCTGAGATATTCCTGTCAGATCAATGGTTTTTCTTCTCTCAATCTTACCAAGTTAGATGTTCTTTCAAAATTTTCAGAGATCAAATTAGGTGTTTCGTATAAGCATATTGGTGGAAAAATATACGAGTCATTCCCTGCAGACCTTCAAGTTTTAGATCAAATACAGGTTGAGTACGAAGTGATGCCTGGTTGGGAAAGTGATATTTCTTTGATTAGAAAATACGAGGATCTGCCTTTGGCAGCTCGTCTATATGTGCAGAGGATTGAAGAGCTTGTTGGCACTCCCATTCATTACATTGGTGTTGGCCCTGGCCGGGATGCCCTCATATTCAAATAGTTAGTTTCCCTATTTTTTTCTCGACAACTAACTTATTTTTAATAGAGAATACTCTGAATTCTCAAAAGATTTGACTTAAAACATTTTTGAGATTATATATATATATATATATA

Network for GWHGAAEX004586

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00709.20	Adenylsucc_synt	83	502	1.80E-172

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01939	purA, ADSS	Metabolic pathways	map01100
		Purine metabolism	map00230
		Pyrimidine metabolism	map00240

Gene Ontology

GO term	Ontology	Name
GO:0006164	Biological Process	purine nucleotide biosynthetic process
GO:0005525	Molecular Function	GTP binding
GO:0004019	Molecular Function	adenylosuccinate synthase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.500
SRP064423	SRR2545915	Juvenile tuber	31.320
SRP108465	SRR5643513	five period of Gastrodia elata	35.930
	SRR5643514	five period of Gastrodia elata	40.520
	SRR5643515	five period of Gastrodia elata	37.580
	SRR5643524	five period of Gastrodia elata	38.000
	SRR5643525	five period of Gastrodia elata	30.930
	SRR5643528	five period of Gastrodia elata	42.950
	SRR5643658	five period of Gastrodia elata	30.510
	SRR5643659	five period of Gastrodia elata	37.160
	SRR5643660	five period of Gastrodia elata	36.930
	SRR5643661	five period of Gastrodia elata	33.560
	SRR5643662	five period of Gastrodia elata	33.760
	SRR5643663	five period of Gastrodia elata	39.910
	SRR5643664	five period of Gastrodia elata	32.450
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	58.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	57.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	57.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.880
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	53.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	61.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	73.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	61.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	55.720
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	55.720
SRP279888	Gastro	Gastrodia elata tuber	50.20
	Juven	Juvenile tuber	35.52
	Mother_Gastro	Mother tuber of Gastrodia elata	40.98
	Mother_Juven	Mother tuber of Juvenile	41.09