Detail information of GWHGAAEX004589/evm.TU.scaffold_15.247
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672157560|ref|XP_008798494.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9FMF6|PP444_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g64320, mitochondrial (Precursor) |
| trEMBL | tr|M0SKR8|M0SKR8_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P03510_001} |
| TAIR | AT5G64320 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 7099471 | 7117749 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004589
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 113 | 141 | 0.19 |
| PF01535.19 | PPR | 151 | 173 | 0.079 |
| PF01535.19 | PPR | 218 | 248 | 0.22 |
| PF13041.5 | PPR_2 | 250 | 299 | 1.30E-12 |
| PF12854.6 | PPR_1 | 316 | 346 | 5.20E-09 |
| PF12854.6 | PPR_1 | 349 | 379 | 6.60E-07 |
| PF13041.5 | PPR_2 | 386 | 435 | 5.60E-20 |
| PF13041.5 | PPR_2 | 457 | 505 | 2.50E-17 |
| PF01535.19 | PPR | 530 | 559 | 0.00086 |
| PF01535.19 | PPR | 566 | 594 | 0.0033 |
| PF13041.5 | PPR_2 | 597 | 645 | 2.60E-16 |
| PF13041.5 | PPR_2 | 666 | 711 | 1.40E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.400 |
| SRR2545915 | Juvenile tuber | 22.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.640 |
| SRR5643514 | five period of Gastrodia elata | 10.610 | |
| SRR5643515 | five period of Gastrodia elata | 11.420 | |
| SRR5643524 | five period of Gastrodia elata | 10.590 | |
| SRR5643525 | five period of Gastrodia elata | 18.930 | |
| SRR5643528 | five period of Gastrodia elata | 16.010 | |
| SRR5643658 | five period of Gastrodia elata | 17.380 | |
| SRR5643659 | five period of Gastrodia elata | 14.700 | |
| SRR5643660 | five period of Gastrodia elata | 16.050 | |
| SRR5643661 | five period of Gastrodia elata | 12.510 | |
| SRR5643662 | five period of Gastrodia elata | 17.170 | |
| SRR5643663 | five period of Gastrodia elata | 17.030 | |
| SRR5643664 | five period of Gastrodia elata | 16.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.07 |
| Juven | Juvenile tuber | 16.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.17 | |
| Mother_Juven | Mother tuber of Juvenile | 19.70 |