Gene detail

Database	Orthologs	E value	Annotation
COG	gi\|262196624\|ref\|YP_003267833.1\|	1.00E-13	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOG	KOG4205	6.00E-142	RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
nr	gi\|672157527\|ref\|XP_008798476.1\|	0	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Phoenix dactylifera]
Swissprot	tr\|Q8W034\|RNP1_ARATH	6.00E-76	Heterogeneous nuclear ribonucleoprotein 1
trEMBL	tr\|B9SSS5\|B9SSS5_RICCO	0	Heterogeneous nuclear ribonucleoprotein 27C, putative {ECO:0000313\|EMBL:EEF33355.1}
TAIR	AT3G07810	6.00E-142	RNA-binding (RRM/RBD/RNP motifs) family protein

Scaffold	Start	End	Strand
GWHAAEX00000019	7324651	7327313	+

Transcript Sequence
>GWHTAAEX004595 ATGGATTTGTTTTCAGCTGGATCGAGGATGGAGTCGGAAGTCGGAAAGCTTTTCATCGGGGGAATTTCTTGGGACACCGATGAAGATCGCCTCCGGGAGTATTTCAAGAGCTTTGGGGAAGTCGTCGAGGCCGTAATCATGAAGGATCGAGCCACCGGTCGGGCCCGAGGCTTCGGATTCGTGGTCTTCGCAGATCCTTCTGTTGCGGAGCGTGTCGTCATGGAGAAGCATCTAATCGATGGTCGGCTGGTGGAAGCAAAGAAGGCTGTGCCGAGGGACGATCCGCACATTCTCAACAGATGCGTCCGCATTCTCCCGGGCTCTCCCGGTCCTGGGCGCACCAAAAAGATTTTTGTGGGAGGTCTTGCCTCCACTGTCACAGATTCAGACTTCAAAAAGTACTTCGAGCAGTTTGGGATCATCACAGATGTCGTCGTAATGTATGATCATAACACTCAGAGACCCAGAGGGTTCGGTTTCATCACATTCGACTCTGAAGATGCTGTAGATAAAGTCCTGCACAAAACCTTTCATGAGCTCAATGGAAAGATGGTGGAGGTGAAGAGAGCCGTTCCCAAAGAGCTCTCCCCGGGTCCTAATGTGCGGCTCCCTATTGGGGGACTCAACCAGCAGGGCCTCAATAGGGTCCACAGCTTCCTTAATGGATACAACCCCGGCTTCAGCCAGAGCTCAGCCGGGAGCTTTGGGATGAGAATGGATGGCCGTTTTGGGCAGCTTCCCAGTGCTCGCAAAATGCTCCCTTCCTTCAATCCTGCTTATGGGATGGGGATGAATTTCGATTCCGGGACGAGCTTAAGCTATGGAGGGGGGAGCTCTGGCTATGGCCGAGCGCTAAATCAATATTACGGCGCGAGCTCCCACAGGTTCGGCAGCCCCATGAATCCTAACTTATCGTTTGGCTCGTCGGCTCGTAATATATGGACGAACGGCGGCCTAAACTACAATGCCGCTCCGGCGAATTCGAGTGGGAGCCTTGTCGGCTTTGGAAGTAATAGTGGGCTCAACTGGGCCGGCTCGTCGTCTCCTCTCGCCACGCATGGCGGCGGCCGGGATTCAAGCTTTGGTGTTGGGAATGAGGGATACGGGATCGGCGAGACCAATTTCGGCTTGGCCGTGGGCGGTTACGGAAGGAGCAATGGCACTGCGGCCTCAGTGAATTCGTCTTTTACGGCAGCAAGCAACGGATACGAAGGGAATTATGCGGATGCGTACGGAAGCGGTTCGATCTACGGGGATCTCACCTGGCAGTCGGGTTCGTCGGAATTGGACGGGTCTAGCCCGTTTGCCTATGGGCTAGGAGCCGCCGGGTCGGATGTGATGGCCAAGGGCTCGTCCGGGTACATGGGCGGGCATAATGTTGCAAATAGACAGATGAATAGAGATGGATGA

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	17	74	1.30E-15
PF00076.21	RRM_1	117	175	4.30E-16

Protein Sequence

Gene family	subfamily
--	--

KO	Enzyme	pathway	mapID
K14411	MSI	mRNA surveillance pathway	map03015

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0003723	Molecular Function	RNA binding

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.410
SRP064423	SRR2545915	Juvenile tuber	20.680
SRP108465	SRR5643513	five period of Gastrodia elata	48.700
	SRR5643514	five period of Gastrodia elata	34.060
	SRR5643515	five period of Gastrodia elata	46.710
	SRR5643524	five period of Gastrodia elata	37.130
	SRR5643525	five period of Gastrodia elata	81.240
	SRR5643528	five period of Gastrodia elata	79.940
	SRR5643658	five period of Gastrodia elata	72.070
	SRR5643659	five period of Gastrodia elata	48.780
	SRR5643660	five period of Gastrodia elata	48.670
	SRR5643661	five period of Gastrodia elata	60.190
	SRR5643662	five period of Gastrodia elata	69.810
	SRR5643663	five period of Gastrodia elata	55.420
	SRR5643664	five period of Gastrodia elata	51.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	52.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.740
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	65.130
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	70.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	70.640
SRP279888	Gastro	Gastrodia elata tuber	43.28
	Juven	Juvenile tuber	39.54
	Mother_Gastro	Mother tuber of Gastrodia elata	50.39
	Mother_Juven	Mother tuber of Juvenile	54.37