Detail information of GWHGAAEX004599/evm.TU.scaffold_15.261
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743867387|ref|XP_010905301.1| | 0 | PREDICTED: probable WRKY transcription factor 20 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q93WV0|WRK20_ARATH | 2.00E-125 | Probable WRKY transcription factor 20 |
| trEMBL | tr|M0SNR2|M0SNR2_MUSAM | 1.00E-162 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P13970_001} |
| TAIR | AT4G26640 | 4.00E-121 | WRKY family transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 7733861 | 7751606 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004599
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03106.14 | WRKY | 231 | 287 | 4.40E-24 |
| PF03106.14 | WRKY | 407 | 464 | 5.40E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | WRKY |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.510 |
| SRR2545915 | Juvenile tuber | 23.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.200 |
| SRR5643514 | five period of Gastrodia elata | 20.620 | |
| SRR5643515 | five period of Gastrodia elata | 24.790 | |
| SRR5643524 | five period of Gastrodia elata | 21.130 | |
| SRR5643525 | five period of Gastrodia elata | 14.330 | |
| SRR5643528 | five period of Gastrodia elata | 16.350 | |
| SRR5643658 | five period of Gastrodia elata | 15.310 | |
| SRR5643659 | five period of Gastrodia elata | 22.100 | |
| SRR5643660 | five period of Gastrodia elata | 18.310 | |
| SRR5643661 | five period of Gastrodia elata | 22.410 | |
| SRR5643662 | five period of Gastrodia elata | 19.360 | |
| SRR5643663 | five period of Gastrodia elata | 21.570 | |
| SRR5643664 | five period of Gastrodia elata | 16.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.09 |
| Juven | Juvenile tuber | 19.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.87 | |
| Mother_Juven | Mother tuber of Juvenile | 12.11 |