Detail information of GWHGAAEX004607/evm.TU.scaffold_150.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|347756200|ref|YP_004863763.1|1.00E-13ribosomal RNA small subunit methyltransferase RsmB [Candidatus Chloracidobacterium thermophilum B]
KOGKOG21986.00E-103tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily
nrgi|672128304|ref|XP_008787636.1|0PREDICTED: uncharacterized protein LOC103705618 isoform X3 [Phoenix dactylifera]
trEMBLtr|A0A097PSF3|A0A097PSF3_9ASPA0S-adenosyl-L-methionine-dependent methyltransferase superfamily protein {ECO:0000313|EMBL:AIU50960.1} (Fragment)
TAIRAT5G661806.00E-103S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000148417233490315+
Transcript Sequence

Network for GWHGAAEX004607

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01189.16Methyltr_RsmB-F1091933.00E-10
PF01189.16Methyltr_RsmB-F2663977.30E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008168Molecular Functionmethyltransferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.900
SRR2545915Juvenile tuber50.900
SRP108465SRR5643513five period of Gastrodia elata28.410
SRR5643514five period of Gastrodia elata29.540
SRR5643515five period of Gastrodia elata27.880
SRR5643524five period of Gastrodia elata30.240
SRR5643525five period of Gastrodia elata19.850
SRR5643528five period of Gastrodia elata27.240
SRR5643658five period of Gastrodia elata40.950
SRR5643659five period of Gastrodia elata24.310
SRR5643660five period of Gastrodia elata19.880
SRR5643661five period of Gastrodia elata18.900
SRR5643662five period of Gastrodia elata19.160
SRR5643663five period of Gastrodia elata25.680
SRR5643664five period of Gastrodia elata20.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.950
SRR6049655Rhizomagastrodiae_C368-T10_good_120.810
SRR6049656Rhizomagastrodiae_C368-T07_good_126.310
SRR6049657Rhizomagastrodiae_C368-T07_good_130.360
SRR6049658Rhizomagastrodiae_C368-T04_good_121.150
SRR6049659Rhizomagastrodiae_C368-T04_good_123.320
SRR6049660Rhizomagastrodiae_C368-T01_good_121.640
SRR6049661Rhizomagastrodiae_C368-T04_good_125.220
SRR6049662Rhizomagastrodiae_C368-T01_good_121.870
SRR6049663Rhizomagastrodiae_C368-T01_good_120.920
SRR6049664Rhizomagastrodiae_C368-T10_good_123.170
SRR6049665Rhizomagastrodiae_C368-T10_good_123.170
SRP279888GastroGastrodia elata tuber 21.76
JuvenJuvenile tuber29.48
Mother_GastroMother tuber of Gastrodia elata 16.83
Mother_JuvenMother tuber of Juvenile 25.05