Detail information of GWHGAAEX004608/evm.TU.scaffold_150.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|479131984|ref|YP_005071944.1|5.00E-25cyclic nucleotide-binding protein [Arthrospira platensis NIES-39]
KOGKOG04980K+-channel ERG and related proteins, contain PAS/PAC sensor domain
nrgi|719985762|ref|XP_010251495.1|0PREDICTED: probable cyclic nucleotide-gated ion channel 5 isoform X1 [Nelumbo nucifera]
Swissprottr|Q8RWS9|CNGC5_ARATH0Probable cyclic nucleotide-gated ion channel 5
trEMBLtr|B9STR6|B9STR6_RICCO0Cyclic nucleotide-gated ion channel, putative {ECO:0000313|EMBL:EEF32981.1}
TAIRAT5G579400cyclic nucleotide gated channel 5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000148569902598847-
Transcript Sequence

Network for GWHGAAEX004608

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00520.30Ion_trans733948.10E-30
PF00027.28cNMP_binding4895775.60E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05391CNGC Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0006811Biological Procession transport
GO:0006813Biological Processpotassium ion transport
GO:0005216Molecular Functionion channel activity
GO:0005249Molecular Functionvoltage-gated potassium channel activity
GO:0005515Molecular Functionprotein binding
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms74.020
SRR2545915Juvenile tuber71.910
SRP108465SRR5643513five period of Gastrodia elata39.580
SRR5643514five period of Gastrodia elata34.610
SRR5643515five period of Gastrodia elata34.650
SRR5643524five period of Gastrodia elata35.110
SRR5643525five period of Gastrodia elata52.480
SRR5643528five period of Gastrodia elata38.740
SRR5643658five period of Gastrodia elata59.660
SRR5643659five period of Gastrodia elata33.150
SRR5643660five period of Gastrodia elata32.330
SRR5643661five period of Gastrodia elata37.070
SRR5643662five period of Gastrodia elata32.190
SRR5643663five period of Gastrodia elata35.310
SRR5643664five period of Gastrodia elata34.900
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_157.200
SRR6049655Rhizomagastrodiae_C368-T10_good_147.580
SRR6049656Rhizomagastrodiae_C368-T07_good_158.810
SRR6049657Rhizomagastrodiae_C368-T07_good_170.280
SRR6049658Rhizomagastrodiae_C368-T04_good_173.710
SRR6049659Rhizomagastrodiae_C368-T04_good_175.550
SRR6049660Rhizomagastrodiae_C368-T01_good_164.150
SRR6049661Rhizomagastrodiae_C368-T04_good_165.810
SRR6049662Rhizomagastrodiae_C368-T01_good_157.210
SRR6049663Rhizomagastrodiae_C368-T01_good_162.030
SRR6049664Rhizomagastrodiae_C368-T10_good_166.190
SRR6049665Rhizomagastrodiae_C368-T10_good_166.190
SRP279888GastroGastrodia elata tuber 35.22
JuvenJuvenile tuber43.64
Mother_GastroMother tuber of Gastrodia elata 35.71
Mother_JuvenMother tuber of Juvenile 40.34