Gene detail

Detail information of GWHGAAEX004614/evm.TU.scaffold_150.19

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2072	Translation initiation factor 3, subunit a (eIF-3a)
nr	gi\|672178147\|ref\|XP_008809196.1\|	PREDICTED: eukaryotic translation initiation factor 3 subunit A-like [Phoenix dactylifera]
Swissprot	tr\|Q40554\|EIF3A_TOBAC	Eukaryotic translation initiation factor 3 subunit A {ECO:0000255\|HAMAP-Rule:MF_03000}
trEMBL	tr\|M0SH35\|M0SH35_MUSAM	Eukaryotic translation initiation factor 3 subunit A {ECO:0000256\|HAMAP-Rule:MF_03000, ECO:0000256\|SAAS:SAAS00003684}
TAIR	AT4G11420	eukaryotic translation initiation factor 3A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000148	1124716	1192870	+

Transcript Sequence
>GWHTAAEX004614 CAACAGGCTGCGAATAACGATACCAAACCCTAAAATCGTAAATCGCACAGGACCGAGGCTGCATCTGGTCTCTGGGTTTCCTCCTTCTTCTTCAGCCTCGAGGGCGCAGGTTCTTATTTGTGCCTGCTCTTGTGATAGCAGGCATTAAATAAAATTTTTGTGATAATGGCAACCTTTGCAAAGCCCGAAAACGCTTTGAAGCGAGCAGAGGAGTTAATAAATGTTGGTCAAAAACAAGCTGCCTTACAGGCTCTTCATGACCTCATAACTTCAAAGCGGTACAGGGCATGGCAAAAGACTCTCGAAAGAATTATGTTCAAATATGTTGAACTCTGTGTGGACATGCGGAAAGGTAGATATGCAAAAGATGGTCTAATACAGTATCGCATAGTTTGTCAACAAGTAAATGTTAGCTCTTTGGAGGAGGTCATAAAATATTTTATGCATCTTTCTACTGAGAAGGCAGAGCATGCTCGAAACCAGGCACAAGCCCTGGACGATGCATTAGATGTGGAAGATTTGGAAGCAGATAAACGCCCTGAAGATCTGATGCTAAGTTATGTAAGTGGAGAGAAGGGAAAGGACAGGTCTGACAGGGAACTTGTCACCCCATGGTTCAAATTTTTATGGGAAACCTACAGGACAGTGCTTGAAATTCTAAGGAATAATTCTAAGTTGGAGGCTTTATATGCTATGACTGCACACCGAGCATTTCAGTTCTGCAAGCAATACAAAAGGACAACTGAATTTCGCCGGCTGTGTGAGATTATACGAAATCATCTGACAAATCTAAATAAATATCGAGATCAAAGGGACCGACCTGATTTAACTGCCCCTGAAAGCTTGCAGCTTTACCTAGATACTCGAATTGACCAGTTAAAGATAGCTACTAATCTAGAGTTATGGCAGGAAGCATTTCGTTCAGTGGAGGATATTCATGGTTTGATGAGCTTGGTGAAAAGGCACCCAAAGCCTTTGTTGATGGCTATATATTATGCAAAGTTAATAGAAATATTTTGGGTTGCACAGAGTCATCTATACCATGCTTATGCATGGCTTAAGCTGTTCTATTTGCAGAAAAGTTATAATAAAAACTTGACACAAAAGGATTTGCAGTTGTTAGCTTCATCTGTTTTGCTAGCTGCAATTTCGGTAACCCCTTATGACCGCCGGCACGGTGCTTCACATGCGGAGCTTGAAAATGAAAATGAGCGCAACATGAGAATGTCCAGCCTCATTGGTTTTAATGTTGATCCAAAGAAAGAGACTAGAGAAGTGTTGTCAAGAGCAACTCTTCTTTCAGAACTGTATTCCAAGGGAGTTATATCATGTGTATCACAAGAAGTGAAGGATCTTTACAGCCTTCTTGAACTTGAATTCGCGCCTCTTGATTTAGCTGTAAAAGTTCAACCAATTTTTGCCAAAATATCAAAGATTAGCGGCAAGCTTGCGTCAGCTACTTCTGTTCCTGAAGTTCAATTATCTCAATATATTCCCACTTTAGAAAAGCTAACTGCTTTGAGGGTTTTGCAGCAGGTTTCTGGGGTGTACCATACGATGAAAATTGAAACATTAACTAGGATGATTCCATTTATGAATTTCTCTGCTATTGAGAAAATATCAGTTGATGCTAAAACATATGCTTTTGTTTCGATGGACTTTGATCATAGGAAGGGAGCTGTGACTTTTAAAAACAAGGACATTGAGTCCGACGGGCTTTCTGATCACCTGATGATTTTTGCTGATTCTCTTAATAAAGCAAGGGAAATGATTTATCTCCCACTGAAGAGGCAGCCGAAATTGGGTGAAAACTTGTATGGTTTGGTAGATATTGTGGAGAGGGAGCATCGGAGGCTACTTGCTAGGAAATCTATTATTGAGAAACGTAAAGAAGAACATGAAAGACTGATGCTAGAACGGGAAAAGGAAGAAGAGTCAAGAAGGATAAAACTGCAGAAGACAACTGAGGAGGCAGAACAGAGGCGACTTGCTACTGAATATACACGCAGAGAAGAGCTGCGAATTCGCCGTGAGATCGAAGAAAGAGAACTTCAAGAAGCCCAAGCATTGCTTTTGCAATCAGAAAAAGGTCCTAAAAAGAAGGGCAAAAGAACTGCATTTGAGGGTGAGAAGGTTACAAAACAAGCGATTCTTGAGTTGGCCCTAAATGAACAACTCAAGGAGCGACTAGAAATGGAAAAGAAACTACAGAAGCTTGCCAAAACTATGGATTACATGGAACGAGCAAAGAGAGAAGAGGAGGCCCCCCTGATCGAGAAGGCATTTGAGCAGCATATAGTTGTAGAACAAACCATTCATGAGCACGAGCAACTGAGGGAGATTGAACTTAGTAAGGAGCACCATGTGGGAGATCTTCAAGAAAAGAATCGTTTAAGCCGGTTGCTGGACAATAAGATTACTTTCCAGAAAAGAATAGAAAATCTCCGAGATGCAGAATATAAGCGGCTGAGGAAAGAGCGGGAGGTCCGACTCAGCCAGCAAATATCAATGAGGAAACTTGATAGAGAAATGAAGAGAAAGCTTTTTTTCTACATCAAATCCGAGGAGGAAAGACTGGCAAGACTTCATGAAGAGGAAGAAGCTCGAAAAGTTGAAGAGGCTGAGAAACGAAAGAGGGAAGAAGCTGAACGAAAAGCAAAGCTCGATGAAATTGCTGAAAAGCAGAGGCAGAGGGAGAGGGAGTTGGAAGAGAAGGAAAGGCTACGAAGGGAAGCCCTTCTAAACTTTAGGGGTAATGAACCTTTGACCAGGTCAGCTGATTCAGTAGTTAGTTCACGACCGACAGAACCTGTGGCTGCTACTGCTGCTGCAGCACCTGCTGCTGGGAAGTACATTCCAAAGTTCCGCCGTGAGAAGACCGAGGGTGTGGTAGCAACCCCTTTGCCAGAAGCGGAACGATGGGGTAGGCATGAAGATCGCCCTCCACAGTCAAGCGACAGATGGCGTGGTGATGATCGAGACCGCAACAGGCCTTCGTTTGGCGGATCAAGGCTGCCATCTTCAAACTCTTCATGGTCTTCCTCGAGATCACGGGGTTAATGATTTCATCCCCTGTAGCTGCTGATCTAGTGGGGAATGGGAGAGATGCGCTTCCTTGGAAATTATTTTGCAGCAAAAGTGGAGGTGGGAATCTTTTTTGTTTTTGAACCTTGTGATTCGTGGTGTGCTGTGAAAAGTTGATTATGAATCAGTGCGTTTCCTATGCTCAGTCTTGAATTATGTTGGAATTATAACACTTCAATAAAGCATTTTGATAGTGGCCTATTTTGGCGGCAGATTAAAAGTTTGAATTTGATGTTGTATTATCTCTTAAATTTTTAATTTGTACAAATAATGACGCATGTTTTCTGTTTGTATGATCTAACATGAGGTGAGTTTGGGTTTTAATACATTGGTTTTCTAGGCCAT

Network for GWHGAAEX004614

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01399.26	PCI	374	510	1.50E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03254	EIF3A	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005852	Cellular Component	eukaryotic translation initiation factor 3 complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	134.610
SRP064423	SRR2545915	Juvenile tuber	134.220
SRP108465	SRR5643513	five period of Gastrodia elata	79.590
	SRR5643514	five period of Gastrodia elata	55.680
	SRR5643515	five period of Gastrodia elata	62.460
	SRR5643524	five period of Gastrodia elata	54.560
	SRR5643525	five period of Gastrodia elata	51.620
	SRR5643528	five period of Gastrodia elata	48.790
	SRR5643658	five period of Gastrodia elata	54.880
	SRR5643659	five period of Gastrodia elata	95.080
	SRR5643660	five period of Gastrodia elata	101.700
	SRR5643661	five period of Gastrodia elata	93.440
	SRR5643662	five period of Gastrodia elata	86.090
	SRR5643663	five period of Gastrodia elata	89.810
	SRR5643664	five period of Gastrodia elata	100.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	112.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	87.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	86.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	146.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	126.800
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	158.570
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	123.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	114.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	69.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	77.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	63.500
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	63.500
SRP279888	Gastro	Gastrodia elata tuber	78.77
	Juven	Juvenile tuber	120.56
	Mother_Gastro	Mother tuber of Gastrodia elata	35.22
	Mother_Juven	Mother tuber of Juvenile	70.00