Gene detail

Detail information of GWHGAAEX004619/evm.TU.scaffold_150.32

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743772412\|ref\|XP_010916515.1\|	3.81E-108	PREDICTED: transcription factor bHLH30-like [Elaeis guineensis]
Swissprot	tr\|Q9S7Y1\|BH030_ARATH	2.00E-76	Transcription factor bHLH30
trEMBL	tr\|K4ALF0\|K4ALF0_SETIT	4.00E-102	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si039730m}
TAIR	AT1G68810	7.00E-76	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000148	1948243	1953149	+

Transcript Sequence
>GWHTAAEX004619 AAAACAAAAAAAAAAAAACAAAGGCGTAAGAGTAAAGTTTACTGGCTCAGCTGCTGCCGGCTTCCCAAAAGCGAGCTTAATTTCCCCGTCAACAAAACCTGTATATAAGTTCACATCATTTCCTTTGGTGTGTGGAAGTAATGGATCCCTCATCCTCTCAACGTTTCTCTAATTACGGGATGATGAATCAAGAGATGCATGATCCAGCAATCCTACCATGGCAGGAGAACAGCAGATCCTTCCTCTCCCCCTCCCTGCCACCGCTCCCCCCTCCGGCCGCCTCTCTGTACACCGATTTCTATTCCCGCAGGCTGGCCTTCGGAAGCTCCATCGGCTTATCTGCCTCCAACCCAATCGGCCTCGCCGGCCTCTACATGGGCAACGGAGGCCCCATCTCTGAGCTCGGAAAGATGACCGCGCAGGAGATCATGGACGCGAAGGCGCTTGCTGCATCGAAGAGCCACAGCGAGGCCGAGCGGCGCCGTCGCGAGCGCATCAACACTCACCTTACCAAGCTGCGCAGCCTTCTCCCCAGCACCACTAAAACGGACAAGGCGTCGCTGCTGGCCGAAGTGATACAGCACGTGAAGGAGCTGAAGAGGCAGACGTCCGAAATCGCAGAGGAGAGCCCGCTGCCCACGGAGGCGGACGAGCTCACTGTGGACGCAGCCAGCGACGAGGACGGCCGTCTCATAGTGACCGCTTCTCTGTGCTGCGAAGACCGCACAGACCTCCTCCCAGAGCTTATCAAAGCCCTTAAAGCTCTCCGCCTCCGCACCGTCAAAGCGGAGATCACCACTCTCGGCGGCCGAGTTAAGAACGTTCTCGTCGTTACCTCCGATGATGCTGATGAGCAGCAGCAACAGCAGTATTCGTTGGCGTCAATCCAGGACGCGCTTAAGGCTGTGATGGAGCGCACAGCGGCGGTGGATGAGCCGGCTTTTGCCGCAGGCATTAAACGCCAGCGGACGGCCAATTTGTCCAGCATTCTCGACCACAGATCCATCTAGCTTTCTGCCAACAGGATCACGCATCAAGATTCTATAAGGTTTTCGCGCGGGTAATTAGAGTTGCAAATAAGAATGGCAAAAGGTCTGTCACAGTTCATATTGAATCCAAAGCTAGTTGTTCGCTCAAAGACAAGATGAAACTATGTGATGGCCACTGCCGAGCAGACCTTTTTAAAGCTTGTCTGGTGTTCTTTTTTCAAAAAATTCAGATGGCTTGTTTGGTCTAATTGATGCCAAATTTTGAGAAAACAGTGTTATCAATGATGATGCCGTTATGTGACTGTTTCATTTTCTGTTCTGTTGGTTTGTATGATTAATGTATTGTGCGAGTTTATGAAATTACATCATTCTCTGTTTTGAGAGCAAGTCCATCCCATATTTTCATCTTTAGTTTGTGAAATTAAAC

Network for GWHGAAEX004619

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.25	HLH	106	152	1.20E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.560
SRP064423	SRR2545915	Juvenile tuber	1.210
SRP108465	SRR5643513	five period of Gastrodia elata	1.940
	SRR5643514	five period of Gastrodia elata	4.600
	SRR5643515	five period of Gastrodia elata	1.090
	SRR5643524	five period of Gastrodia elata	2.820
	SRR5643525	five period of Gastrodia elata	5.180
	SRR5643528	five period of Gastrodia elata	2.130
	SRR5643658	five period of Gastrodia elata	18.590
	SRR5643659	five period of Gastrodia elata	1.970
	SRR5643660	five period of Gastrodia elata	0.630
	SRR5643661	five period of Gastrodia elata	1.120
	SRR5643662	five period of Gastrodia elata	1.040
	SRR5643663	five period of Gastrodia elata	0.640
	SRR5643664	five period of Gastrodia elata	2.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.620
SRP279888	Gastro	Gastrodia elata tuber	2.35
	Juven	Juvenile tuber	3.32
	Mother_Gastro	Mother tuber of Gastrodia elata	0.41
	Mother_Juven	Mother tuber of Juvenile	0.52