Gene detail

Detail information of GWHGAAEX004625/evm.TU.scaffold_151.4

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0046	Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily
nr	gi\|743767393\|ref\|XP_010913959.1\|	PREDICTED: fimbrin-4 [Elaeis guineensis]
Swissprot	tr\|Q9FKI0\|FIMB5_ARATH	Fimbrin-5 {ECO:0000305}
trEMBL	tr\|U5DD49\|U5DD49_AMBTC	Uncharacterized protein {ECO:0000313\|EMBL:ERN18338.1}
TAIR	AT5G35700	fimbrin-like protein 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000155	101984	129493	-

Transcript Sequence
>GWHTAAEX004625 ATGGCCGGATTTGTTGGTGTTGTCGTGTCTGATCCGTGGCTTCAGAGCCAGTTCACTCAGGTGGAGCTTCGAAGCCTTAAAGCCAAATACAACTCTATAAAGAGAGATCATGGTCATGTGAGAGTAGAAGATTTGCCACCCACATTGGCAAAAGTAAAGAGCATCAAGGACGCGATCACCCAAGAGGAGATTTCTTCCATTTTAGAAGAGTCCTATCCGGATTCTTGGCAAGAGATCGAGTTTGAGCAATTTCTTCGGGAATGTTTGAATGTACAAACAATAGCTACGGGGAAATTGGGTGATGTAAAGAATTCCTCTTCGTTCCTAAAAGCTTCGACGACCACACTTCTGCACACCATAAATGAATCGGAAAAAGCTTCGTATGTGGCGCATATAAACACTTATCTTCGAGATGACTCGTATTTGAAAACATATCTTCCAGTTGATCCGTCGTCGAATGAAATATTCAACGTAGTTAAAGATGGTGTCCTCCTATGTAAATTGATCAATGTTGCTGTGCCGGGGACAATAGATGAGAGGGCCATCAATACAAAGAGTGTATTGAATCCTTGGGAAAGGAATGAAAACCACACTCTTTGCCTCAACTCTGCAAAAGCTATTGGGTGCACTGTTGTTAACATTGGAACTGAAGACTTGGTCGAAGGGAGGCCTTATTTGGTGCTGGGTTTAATTTCTCAAATTATTAAGATACAACTCTTAGCAGATCTCAACTTAAAGAAGATGCCTCAACTAGTGGAGCTTGCAGATGACTGCAAGGATATTGAAGAGCTTTTGAATTTACCACCAGAGAAGATGCTGCTTAAATGGATGAACTTTCACTTGCAGAAGGCTGGTTATAAGAAACCTGTAACAAATTTTTCTTCTGATTTGAAGGATGGGAAAGCTTATGCATACCTTCTGAATGTTCTTTCCCCTGAACATTGTTCTCTAGACACTTTAGCTGCTAACGATCCAACTCAAAGGGCACAGCTTGTTCTTGATCATGCAGAGAAAATGGACTGTAAACGATACCTCACCCCAACAGACATAATTGAAGGATCAGCTAACCTCAACCTTGCTTTTGTTGCACAAATATTTCATCAGAGGAATGGGCTTTCCACAGACAGCAAAAAGATGTCCTTTGCTGAGATGCTGCCTGACGAAGTGAAAGCTTCTAGAGATGAACGGGCTTTTAGGATGTGGATCAACAGTCTTGGAATCACTACTTTTGTCAACTGTGTCTTTGAAGATCTCAGAAATGGATGGGTTCTTTTGGAAGTACTTGACAGAGTGTCTCCAGGATCAGTTAATTGGAAACACGCATCAAAACCTCCCATTAAGATGCCATTTCGGAAGGTTGAGAACTGCAATGAAGTTGTGAGAATTGGAAAACAGTTGAAACTCTCTCTGGTCAACGTGGCAGGGAACGACATTGTCCAAGGAAACAAGAAGCTATTGCTCGCTTATTTGTGGCAATTGATGAGATTTAACGTACTGAAGCTGCTGAAGAGCTTGAAATTCCACTCTCAGGGGAAGGAGATGACTGATGCCGACATACTGCACTGGGCCAACAGAAAAGTCAGAACCTCAGGCCGAACCTCCCAAATTGAAAGTTTTAAGGATAAAAACCTATCCACAGGACTATTTTTCCTTGAACTTCTGAGTTCTGTGGAGCCAAGGGTTGTCAATTGGAACCTCGTGACGAAGGGCTCCAACGATGATGAGAAAAGATTGAACGCAACGTACACAATCAGTGTGGCTAGAAAACTGGGCTGCTCCGTCTTCCTGCTGCCAGAAGACATAATGGAGGTTAACCAGAAGCTGATACTGGTGTTCATGGCGAGCATCATGTGCTGGAGCCTGCAGCAGCAGCAGGGCTCGGAAGATTCGGAAGGGTCGGAAGTGTCCTCTACGGACGATTCTCTGAAGGCTCCCTCCGACGGGGACGATTCCTCCAGCAGCTTTTCCAGTAGCAACCTTCTAGATGACGACGCTTCCTTTATCGGACAAGAAGCTCTCTCTCCCTCCCAAGATCATTATTAGCTCTCATGCATATAATATACCCGTAAGTAATTCTTTCTATAGCTTGCCCCATCATATTTTATTCCATTGGGGGCTGTTTATACCTCAATCTTTCCTCAAAAATTAAAAAAAAGAGAGTCAATTTTATCCATATTTATATTTGAGGTATAAAGCTGTTGAAAAATTGTTCTTAAATCTATGAAAAAGCAAAAGAAATGTAATATTTATAGGAAAGCGATTTAATGGGAGTCCATATGCGAAAATAAATGAACATACACTTGTAAAGGTGATTGCAGGGTTTTCAGATTTGTTTTAATTGTGGAAATTTTGGTTGTCTAAGCAACTGCACGGTTTCAAACTGGATTGTGCAAATTAAAGTGCCAGCATGTGTATATTTTTTTGTGAGGATTTATTGATGTTGTTTAGGTTATTCTAGGTTTTTGTTTCAATACTTTATTGATTTAATGATTCAAAATCTATAGAATGTTTCAAG

Network for GWHGAAEX004625

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00307.30	CH	150	237	1.50E-17
PF00307.30	CH	268	368	6.00E-23
PF00307.30	CH	395	496	5.00E-17
PF00307.30	CH	516	617	9.10E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.490
SRP064423	SRR2545915	Juvenile tuber	16.290
SRP108465	SRR5643513	five period of Gastrodia elata	26.050
	SRR5643514	five period of Gastrodia elata	25.980
	SRR5643515	five period of Gastrodia elata	38.930
	SRR5643524	five period of Gastrodia elata	26.460
	SRR5643525	five period of Gastrodia elata	30.760
	SRR5643528	five period of Gastrodia elata	52.520
	SRR5643658	five period of Gastrodia elata	34.110
	SRR5643659	five period of Gastrodia elata	13.840
	SRR5643660	five period of Gastrodia elata	11.940
	SRR5643661	five period of Gastrodia elata	16.970
	SRR5643662	five period of Gastrodia elata	16.540
	SRR5643663	five period of Gastrodia elata	18.720
	SRR5643664	five period of Gastrodia elata	11.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.100
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.470
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.050
SRP279888	Gastro	Gastrodia elata tuber	16.77
	Juven	Juvenile tuber	10.87
	Mother_Gastro	Mother tuber of Gastrodia elata	50.20
	Mother_Juven	Mother tuber of Juvenile	35.15