Detail information of GWHGAAEX004631/evm.TU.scaffold_151.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672119489|ref|XP_008782983.1|0PREDICTED: APO protein 1, chloroplastic [Phoenix dactylifera]
Swissprottr|Q9XIR4|APO1_ARATH1.00E-165APO protein 1, chloroplastic (Precursor)
trEMBLtr|F2D4H1|F2D4H1_HORVD0Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_21944.3, ECO:0000313|EnsemblPlants:MLOC_21944.4}
TAIRAT1G648104.00E-165Arabidopsis thaliana protein of unknown function (DUF794)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000155266171291559+
Transcript Sequence

Network for GWHGAAEX004631

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05634.10APO_RNA-bind992939.10E-86
PF05634.10APO_RNA-bind3364472.70E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.870
SRR2545915Juvenile tuber13.420
SRP108465SRR5643513five period of Gastrodia elata10.140
SRR5643514five period of Gastrodia elata8.950
SRR5643515five period of Gastrodia elata9.940
SRR5643524five period of Gastrodia elata10.070
SRR5643525five period of Gastrodia elata9.500
SRR5643528five period of Gastrodia elata7.790
SRR5643658five period of Gastrodia elata9.830
SRR5643659five period of Gastrodia elata10.160
SRR5643660five period of Gastrodia elata9.330
SRR5643661five period of Gastrodia elata9.630
SRR5643662five period of Gastrodia elata11.040
SRR5643663five period of Gastrodia elata10.950
SRR5643664five period of Gastrodia elata11.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.240
SRR6049655Rhizomagastrodiae_C368-T10_good_13.920
SRR6049656Rhizomagastrodiae_C368-T07_good_17.310
SRR6049657Rhizomagastrodiae_C368-T07_good_17.850
SRR6049658Rhizomagastrodiae_C368-T04_good_19.570
SRR6049659Rhizomagastrodiae_C368-T04_good_110.400
SRR6049660Rhizomagastrodiae_C368-T01_good_18.950
SRR6049661Rhizomagastrodiae_C368-T04_good_18.680
SRR6049662Rhizomagastrodiae_C368-T01_good_18.370
SRR6049663Rhizomagastrodiae_C368-T01_good_19.040
SRR6049664Rhizomagastrodiae_C368-T10_good_17.060
SRR6049665Rhizomagastrodiae_C368-T10_good_17.060
SRP279888GastroGastrodia elata tuber 13.22
JuvenJuvenile tuber15.84
Mother_GastroMother tuber of Gastrodia elata 10.37
Mother_JuvenMother tuber of Juvenile 12.63