Detail information of GWHGAAEX004632/evm.TU.scaffold_151.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|429216660|ref|YP_007174650.1|3.00E-37archaeal exosome-like complex exonuclease 1 [Caldisphaera lagunensis DSM 15908]
nrgi|743773481|ref|XP_010917085.1|2.99E-138PREDICTED: exosome complex component MTR3 [Elaeis guineensis]
Swissprottr|Q84T68|EXOS5_ORYSJ1.00E-09Exosome complex exonuclease RRP46 homolog
trEMBLtr|W9QJQ0|W9QJQ0_9ROSA2.00E-133Exosome complex component {ECO:0000313|EMBL:EXB38678.1}
TAIRAT4G274907.00E-693'-5'-exoribonuclease family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000155297562298842-
Transcript Sequence

Network for GWHGAAEX004632

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01138.20RNase_PH251492.00E-28
PF03725.14RNase_PH_C1532155.60E-10
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12587MTR3, EXOSC6 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.680
SRR2545915Juvenile tuber18.770
SRP108465SRR5643513five period of Gastrodia elata19.600
SRR5643514five period of Gastrodia elata19.260
SRR5643515five period of Gastrodia elata19.420
SRR5643524five period of Gastrodia elata16.210
SRR5643525five period of Gastrodia elata12.880
SRR5643528five period of Gastrodia elata9.460
SRR5643658five period of Gastrodia elata9.680
SRR5643659five period of Gastrodia elata21.850
SRR5643660five period of Gastrodia elata25.650
SRR5643661five period of Gastrodia elata23.380
SRR5643662five period of Gastrodia elata25.750
SRR5643663five period of Gastrodia elata21.320
SRR5643664five period of Gastrodia elata17.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.870
SRR6049655Rhizomagastrodiae_C368-T10_good_125.280
SRR6049656Rhizomagastrodiae_C368-T07_good_126.170
SRR6049657Rhizomagastrodiae_C368-T07_good_119.480
SRR6049658Rhizomagastrodiae_C368-T04_good_120.390
SRR6049659Rhizomagastrodiae_C368-T04_good_117.960
SRR6049660Rhizomagastrodiae_C368-T01_good_121.470
SRR6049661Rhizomagastrodiae_C368-T04_good_118.860
SRR6049662Rhizomagastrodiae_C368-T01_good_130.530
SRR6049663Rhizomagastrodiae_C368-T01_good_125.650
SRR6049664Rhizomagastrodiae_C368-T10_good_122.630
SRR6049665Rhizomagastrodiae_C368-T10_good_122.630
SRP279888GastroGastrodia elata tuber 21.57
JuvenJuvenile tuber13.04
Mother_GastroMother tuber of Gastrodia elata 16.28
Mother_JuvenMother tuber of Juvenile 6.88