Detail information of GWHGAAEX004642/evm.TU.scaffold_151.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 6.00E-127 | FOG: PPR repeat |
| nr | gi|743821353|ref|XP_010932012.1| | 1.76E-168 | PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Elaeis guineensis] |
| Swissprot | tr|O80488|PPR23_ARATH | 2.00E-149 | Pentatricopeptide repeat-containing protein At1g09190 |
| trEMBL | tr|F6I4R9|F6I4R9_VITVI | 3.00E-158 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB61906.1} |
| TAIR | AT1G09190 | 6.00E-127 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000155 | 652715 | 654175 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004642
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 151 | 174 | 0.009 |
| PF12854.6 | PPR_1 | 176 | 203 | 3.20E-07 |
| PF01535.19 | PPR | 208 | 238 | 0.00012 |
| PF13041.5 | PPR_2 | 307 | 354 | 2.70E-13 |
| PF01535.19 | PPR | 382 | 407 | 0.0025 |
| PF01535.19 | PPR | 451 | 476 | 0.0065 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.290 |
| SRR2545915 | Juvenile tuber | 3.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.170 |
| SRR5643514 | five period of Gastrodia elata | 3.420 | |
| SRR5643515 | five period of Gastrodia elata | 3.740 | |
| SRR5643524 | five period of Gastrodia elata | 2.760 | |
| SRR5643525 | five period of Gastrodia elata | 4.770 | |
| SRR5643528 | five period of Gastrodia elata | 2.850 | |
| SRR5643658 | five period of Gastrodia elata | 1.720 | |
| SRR5643659 | five period of Gastrodia elata | 12.990 | |
| SRR5643660 | five period of Gastrodia elata | 12.130 | |
| SRR5643661 | five period of Gastrodia elata | 12.760 | |
| SRR5643662 | five period of Gastrodia elata | 8.600 | |
| SRR5643663 | five period of Gastrodia elata | 9.020 | |
| SRR5643664 | five period of Gastrodia elata | 9.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.60 |
| Juven | Juvenile tuber | 7.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.88 | |
| Mother_Juven | Mother tuber of Juvenile | 5.49 |