Detail information of GWHGAAEX004645/evm.TU.scaffold_151.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|720040718|ref|XP_010268681.1|0PREDICTED: BRCA1-A complex subunit BRE [Nelumbo nucifera]
trEMBLtr|M0RXX3|M0RXX3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P07650_001}
TAIRAT5G424703.00E-125Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000155666330724445+
Transcript Sequence

Network for GWHGAAEX004645

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06113.11BRE263319.60E-37
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12173BRE, BRCC45 Homologous recombination map03440

Gene Ontology

GO term OntologyName
GO:0070531Cellular ComponentBRCA1-A complex
GO:0070552Cellular ComponentBRISC complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms42.780
SRR2545915Juvenile tuber36.570
SRP108465SRR5643513five period of Gastrodia elata36.160
SRR5643514five period of Gastrodia elata38.050
SRR5643515five period of Gastrodia elata37.490
SRR5643524five period of Gastrodia elata35.370
SRR5643525five period of Gastrodia elata47.620
SRR5643528five period of Gastrodia elata45.380
SRR5643658five period of Gastrodia elata47.440
SRR5643659five period of Gastrodia elata39.980
SRR5643660five period of Gastrodia elata41.170
SRR5643661five period of Gastrodia elata37.440
SRR5643662five period of Gastrodia elata36.580
SRR5643663five period of Gastrodia elata38.800
SRR5643664five period of Gastrodia elata41.110
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_132.250
SRR6049655Rhizomagastrodiae_C368-T10_good_139.870
SRR6049656Rhizomagastrodiae_C368-T07_good_133.570
SRR6049657Rhizomagastrodiae_C368-T07_good_135.960
SRR6049658Rhizomagastrodiae_C368-T04_good_136.980
SRR6049659Rhizomagastrodiae_C368-T04_good_139.580
SRR6049660Rhizomagastrodiae_C368-T01_good_131.830
SRR6049661Rhizomagastrodiae_C368-T04_good_137.740
SRR6049662Rhizomagastrodiae_C368-T01_good_130.490
SRR6049663Rhizomagastrodiae_C368-T01_good_133.740
SRR6049664Rhizomagastrodiae_C368-T10_good_134.900
SRR6049665Rhizomagastrodiae_C368-T10_good_134.900
SRP279888GastroGastrodia elata tuber 68.54
JuvenJuvenile tuber41.82
Mother_GastroMother tuber of Gastrodia elata 53.64
Mother_JuvenMother tuber of Juvenile 36.50