Detail information of GWHGAAEX004650/evm.TU.scaffold_151.34
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672182076|ref|XP_008811274.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g55840 [Phoenix dactylifera] |
| Swissprot | tr|Q9LVQ5|PP432_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g55840 |
| trEMBL | tr|U5D0U2|U5D0U2_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN19236.1} |
| TAIR | AT5G55840 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000155 | 821861 | 825043 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004650
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 150 | 181 | 2.20E-06 |
| PF13041.5 | PPR_2 | 187 | 236 | 2.60E-14 |
| PF12854.6 | PPR_1 | 254 | 285 | 5.10E-10 |
| PF13041.5 | PPR_2 | 292 | 341 | 1.40E-17 |
| PF13041.5 | PPR_2 | 362 | 411 | 3.40E-11 |
| PF12854.6 | PPR_1 | 468 | 495 | 1.60E-07 |
| PF13041.5 | PPR_2 | 502 | 551 | 1.10E-12 |
| PF13041.5 | PPR_2 | 573 | 621 | 8.80E-18 |
| PF01535.19 | PPR | 646 | 674 | 0.00053 |
| PF01535.19 | PPR | 681 | 711 | 3.80E-06 |
| PF13041.5 | PPR_2 | 713 | 761 | 7.40E-12 |
| PF01535.19 | PPR | 822 | 850 | 0.72 |
| PF12854.6 | PPR_1 | 858 | 882 | 8.70E-06 |
| PF13041.5 | PPR_2 | 890 | 937 | 7.30E-10 |
| PF13041.5 | PPR_2 | 959 | 1004 | 3.50E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.660 |
| SRR2545915 | Juvenile tuber | 3.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.360 |
| SRR5643514 | five period of Gastrodia elata | 2.520 | |
| SRR5643515 | five period of Gastrodia elata | 2.070 | |
| SRR5643524 | five period of Gastrodia elata | 1.990 | |
| SRR5643525 | five period of Gastrodia elata | 4.180 | |
| SRR5643528 | five period of Gastrodia elata | 3.500 | |
| SRR5643658 | five period of Gastrodia elata | 4.820 | |
| SRR5643659 | five period of Gastrodia elata | 3.280 | |
| SRR5643660 | five period of Gastrodia elata | 3.370 | |
| SRR5643661 | five period of Gastrodia elata | 2.530 | |
| SRR5643662 | five period of Gastrodia elata | 2.160 | |
| SRR5643663 | five period of Gastrodia elata | 2.890 | |
| SRR5643664 | five period of Gastrodia elata | 2.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.690 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.21 |
| Juven | Juvenile tuber | 6.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.01 | |
| Mother_Juven | Mother tuber of Juvenile | 4.10 |