Gene detail

Detail information of GWHGAAEX004655/evm.TU.scaffold_151.40

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	7.00E-115	FOG: PPR repeat
nr	gi\|743810902\|ref\|XP_010929027.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like [Elaeis guineensis]
Swissprot	tr\|Q8LPF1\|PP387_ARATH	2.00E-115	Pentatricopeptide repeat-containing protein At5g15980, mitochondrial (Precursor)
trEMBL	tr\|M0RYF0\|M0RYF0_MUSAM	2.00E-152	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P09410_001}
TAIR	AT5G15980	7.00E-115	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000155	947440	949998	-

Transcript Sequence
>GWHTAAEX004655 AAAGCTGATAGCATTTGGGGCTTCCGTTCTCGAGCCCAGTACAAGCGTCCAGCCTTAATCCCAAACCCTAACTTGATTCATTTAGCCCTGAACGAGCTTCTGCCCTTCAGTTTTACTCGACCTCTCTTTCTAGCGCCGATGTCTCCGCATCTTGGAACAATGCAAAAAGCTTGGAGATCGCTCTGCCCTCGAATCTCTGCAGATACTGCAAGGATCGGCTTACTCCTGGTGAGACGATCGGAACACAAACTTCCTGAACTCATTCATTCTCCAGTTATTGGGAACCTTGTGCGCCGTTTATTCTCTTCGGCGCCGGCTATCAATCTCGGCTTGGTGTCCGAAATCTTTTCAAGGCCCATTGAATCCAATGAGATCCAGGCCGAACTGGAATCCCGCAATGTTTTTATGGATCGAAATACCGCTTATTTGGCACTTCAGAGCTTCGAAGGTAGTTTGGAAACCGCGCGGAGGTTCTTTAAGTGGGCTTCTGATAGAGGTACCCATATCTTGACGCCAAATTCTTACAATTTGATGCTCAGGATTGTAGCGACGAAGGGGGAGTCGGAGGAATTCTGGGACTTGATCGAAACCATGAAAACGAAAGGCTTTGAGATCTCCAAGGAGACCTACTCCAAGGTTCATGAAAATCTTGCAAATGATGTCGGAAAAGGAGATGATTTTATCGTGCGCTTGAAAGAAACGTATCTTCATACTAGTCAATCTGTGATCCACAAGATTTGTAGGATACTCGAAGCAACTGAAGATCCAGAAGAAATGCGGAGGAGTTTACTGGATCTTGACATTTGTTTGTCATCTGAATTGATTGTTTCCGTGCTGAAAAGTGTAGGCTCCAATCCGCAAAAAGCTCTGGTGTTCTTGGAGTGGGTCATGGATATAAAATCTCTTAAAATGGATAGCAATGTTTACACCACAATCGCAAAGGTTTTTTACCAAGAAGATTGCCTCAAGGAGTTCTGGCATGTTCTTCATAAGATGAGGAATGCTGGATACGAAATGGAGAATGATGCGTATCGTAGACTATTGGTTTGGTTTTACAAGAGGAAGAACATTACTGCAGCTGTGGACTTGTATGAGTTTGTCATGGCCGGTTCTTCAAAACCATCAGCTACTGGTTTCGGGCTTCTTCTAAATTTGATTGCTTTGAGCAAAGATTTGGATATGACTTTGATATCAAGGGCTGTTAGCAATTTTGTAAATTCCGGTAATATCATCGAATCATCAATTTTTAATGGCTTGCTGAAATCGCTCAAGAGGGTGGGCAGACTTGGAGAGTTTAGAAACATACTGAAGGCCATGGTGGAAGGTGCGCTTGAAGCAGATAGCTCAATTCAGAACCAGCCAGATGCAGAACTCTGCAGCGCTCAAAGATTGGATACAGCTTGTGAGCATGTGAAAAACCTGAAAAAACCCAGCATTGTTCTAAATGTTCAAGCTTGGGCCACTTTAGTTCAGAACCATGCTAAGGCTGATGAATTTGACGACGCATTTTTCTGTTTCAGAGGCATGGTTGAGACAATGGATTGTGCACAGAATGGTGGCAAGGCCTTTGAAGTATTGGTTAGTAGGCTTTGCGAGAAGAATAGGCATATGGATGCATTCAATATTCTTAAAAAAATGGTCATTGAAAAGAAGTATAGACCCTTTCTTAGCACTTTTAAGTTTCTTATTAAAAATTTGGTGAATCTGGGTTGTTTGAAAGAAGCTACGAGCCTTGTTGAATTGATGCGAGGTCATGGCTTTCCCCCTTTTGTGGAGCCGTTTATCGATCATATGTCGAAATCGGGCTCTGTCGAAGATGCCATGGGATATTTGAAGGCAATGACATCTAAGAAATTCCCGTCCCGTTCGGCCTTTATTCGGCTTTTCAAAACTTTGCTCAAGGCAGGCAGGCATGAAGTTGCGCAAGATATACTTTACAAATCTCCGGGATGCATTCGTAATCATGAAGATGTTTTGGAGATTTTCTTTTCTATGCAACCTAATGAAAACGTTCTTGCATAGAGCTTGTTCACTTGTAGAAGAAGAAGTAATGATCTTTTGACTTCTTTCTCCTTTTAAAGAATTTGAGAATTTTAAACTTTGTTGGCATAAAGTTGATCAGATGAAGAGATTACTTTTGATACAAATTGTTTGGTTCTTTCTTAGCGAGCTTGTTCACTTGCCGAAGAAATGATCTAGTGCCTTCTTTATCCTTGTGAAGGATTTGAAAATTTTAACTTCGGTTAGCATAAAGTTGATCAAATGAGGAGATTGATTGATGCAACTGTTTGGTTTCGTATTTCATATGAGACAATGAGCAGCACCATTCTGAATTTCACATTCAATGGGCAAAACAAAGGAGTCTGTGCTGATCATTATGCTGCTTTCTTAAACTCTTTATTATGCATCGCATTGCTTGCCTTATTTGCTTAACTGATATTGCAGAGCTTTTAGTTTCTCTGTCAAGTAGTTCAGTGCATTTAGAAACACTCATTCTAAGACTGCATCAAAAACTCAAGGATAATAAACAATGACTGAATTGATGATAAATTCTTGCAG

Network for GWHGAAEX004655

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	128	157	1
PF01535.19	PPR	512	541	0.23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.050
SRP064423	SRR2545915	Juvenile tuber	11.730
SRP108465	SRR5643513	five period of Gastrodia elata	9.560
	SRR5643514	five period of Gastrodia elata	9.200
	SRR5643515	five period of Gastrodia elata	8.190
	SRR5643524	five period of Gastrodia elata	10.140
	SRR5643525	five period of Gastrodia elata	4.570
	SRR5643528	five period of Gastrodia elata	4.890
	SRR5643658	five period of Gastrodia elata	4.110
	SRR5643659	five period of Gastrodia elata	13.290
	SRR5643660	five period of Gastrodia elata	17.800
	SRR5643661	five period of Gastrodia elata	15.130
	SRR5643662	five period of Gastrodia elata	16.630
	SRR5643663	five period of Gastrodia elata	14.310
	SRR5643664	five period of Gastrodia elata	12.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.670
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.790
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.870
SRP279888	Gastro	Gastrodia elata tuber	10.09
	Juven	Juvenile tuber	10.30
	Mother_Gastro	Mother tuber of Gastrodia elata	4.48
	Mother_Juven	Mother tuber of Juvenile	4.45